Locus 1671

Sequence ID 2L_DroMel_CAF1
Location 4,525,243 – 4,525,357
Length 114
Max. P 0.596962
window2675 window2676

overview

Window 5

Location 4,525,243 – 4,525,357
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.59
Mean single sequence MFE -44.42
Consensus MFE -24.21
Energy contribution -25.41
Covariance contribution 1.20
Combinations/Pair 1.21
Mean z-score -1.90
Structure conservation index 0.55
SVM decision value 0.13
SVM RNA-class probability 0.596962
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4525243 114 + 22407834
ACACUCGGCACUGGUCAUACACUCGGGCUUGCAGUUGGGCGGAGCACCCAUGUAGUCUGGCAAGCAGGCACACACAGGACGCUCCCCAACUACAUGACAAGUGCUGAACAGGCC
....((((((((.(((((........(....)(((((((..((((..((.(((.(((((.....)))))....)))))..)))))))))))..))))).))))))))....... ( -41.50)
>DroVir_CAF1 40596 114 + 1
ACACUCUGCACUUGUCAAACACUCCGGCUUGCAGUUGGGUGGGUUGCCCAUAUAAUCUGGCAGGCAAGCGCAGACUGGACGACUCCCAACAACAUGACAGGUGCUAAAGAGGCC
...((((((((((((((..(((.(((((.....))))))))(((((.(((.....((((((......)).)))).))).)))))..........))))))))))...))))... ( -41.50)
>DroPse_CAF1 41202 114 + 1
ACAUUCUGCACUUGUGCGGCACUCGGGCUUGCAGUUGGGCGGAACGCCAAGGUAGUCCGGAAGGCAAGCGCAAACGGGGUGAUCUCCAGCCACGUGGCAAGUGCUAAACAGGCC
..........(((((..((((((.(.((((((..((((((.....((....)).))))))...)))))).)....((((....)))).(((....))).))))))..))))).. ( -42.80)
>DroGri_CAF1 41073 114 + 1
GCACUCUGCACUUGUCAGACACUCGGGUUUGCAAUUGGGCGGACUGCCCAUAUAGUCUGGCAAGCAAGCGCAGACUGGACGACUGCCAACCACAUGACAAGUGCUAAAGAGGCC
((.((((((((((((((........((((.(((..(((((.....)))))..(((((((((......)).)))))))......))).))))...))))))))))...)))))). ( -48.50)
>DroMoj_CAF1 47736 114 + 1
ACACUCAGCACUUGUCAAGCACUCGGGCUUGCAGUUGGGUGGGCUGCCCAUAUAGUCGGGCAAACAAGCGCAGACUGGACGGCUACCAACCACUUGGCAUGUACUGAAGAGGCC
....((((.((.((.(((((......)))))))((..(((((...(((....((((((.((......)).).)))))...)))......)))))..))..)).))))....... ( -38.20)
>DroAna_CAF1 40597 114 + 1
GCAUUCGGCACUGGUCCUGCACUCGGGCUUGCAGUUGGGAGGCGCGCCCAUGUAGUCUGGCAAGCAGGCGCACACGGGUCGCUCCCCAGCUACGUGACAAGUGCUGAACAGCCC
((.(((((((((.((((.(((........)))(((((((..(((.((((.(((.(((((.....)))))..))).)))))))..)))))))..).))).)))))))))..)).. ( -54.00)
>consensus
ACACUCUGCACUUGUCAAACACUCGGGCUUGCAGUUGGGCGGACCGCCCAUAUAGUCUGGCAAGCAAGCGCAGACUGGACGACCCCCAACCACAUGACAAGUGCUAAACAGGCC
.......((((((((((.......(.((((((...(((((.....))))).............)))))).).....((.......)).......)))))))))).......... (-24.21 = -25.41 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 4,525,243 – 4,525,357
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.59
Mean single sequence MFE -44.87
Consensus MFE -26.33
Energy contribution -27.03
Covariance contribution 0.70
Combinations/Pair 1.32
Mean z-score -1.59
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.524386
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4525243 114 - 22407834
GGCCUGUUCAGCACUUGUCAUGUAGUUGGGGAGCGUCCUGUGUGUGCCUGCUUGCCAGACUACAUGGGUGCUCCGCCCAACUGCAAGCCCGAGUGUAUGACCAGUGCCGAGUGU
((((((.((((((((((.(.(((((((((((((((.((((((((.(.(((.....))).))))))))))))))..)))))))))).)..))))))).))).))).)))...... ( -54.30)
>DroVir_CAF1 40596 114 - 1
GGCCUCUUUAGCACCUGUCAUGUUGUUGGGAGUCGUCCAGUCUGCGCUUGCCUGCCAGAUUAUAUGGGCAACCCACCCAACUGCAAGCCGGAGUGUUUGACAAGUGCAGAGUGU
.((((((...((((.((((((((.((((((.((.((((((((((.((......)))))))....))))).))...)))))).))).((....))...))))).)))))))).)) ( -40.90)
>DroPse_CAF1 41202 114 - 1
GGCCUGUUUAGCACUUGCCACGUGGCUGGAGAUCACCCCGUUUGCGCUUGCCUUCCGGACUACCUUGGCGUUCCGCCCAACUGCAAGCCCGAGUGCCGCACAAGUGCAGAAUGU
.....((((.(((((((....(((((.((........)).((((.((((((.....((....))..((((...)))).....)))))).)))).))))).))))))).)))).. ( -36.20)
>DroGri_CAF1 41073 114 - 1
GGCCUCUUUAGCACUUGUCAUGUGGUUGGCAGUCGUCCAGUCUGCGCUUGCUUGCCAGACUAUAUGGGCAGUCCGCCCAAUUGCAAACCCGAGUGUCUGACAAGUGCAGAGUGC
.((((((...((((((((((((.((((.(((((.....((((((.((......))))))))...(((((.....)))))))))).))))))......)))))))))))))).)) ( -48.40)
>DroMoj_CAF1 47736 114 - 1
GGCCUCUUCAGUACAUGCCAAGUGGUUGGUAGCCGUCCAGUCUGCGCUUGUUUGCCCGACUAUAUGGGCAGCCCACCCAACUGCAAGCCCGAGUGCUUGACAAGUGCUGAGUGU
......((((((((.((.((((((.((((..((.(......).))(((((((((((((......)))))))...........)))))))))).)))))).)).))))))))... ( -39.30)
>DroAna_CAF1 40597 114 - 1
GGGCUGUUCAGCACUUGUCACGUAGCUGGGGAGCGACCCGUGUGCGCCUGCUUGCCAGACUACAUGGGCGCGCCUCCCAACUGCAAGCCCGAGUGCAGGACCAGUGCCGAAUGC
.(((.((((.(((((((....((((.((((..(((.((((((((.(.(((.....))).)))))))))..)))..)))).)))).....))))))).))))....)))...... ( -50.10)
>consensus
GGCCUCUUCAGCACUUGUCAUGUGGUUGGGAAUCGUCCAGUCUGCGCUUGCUUGCCAGACUACAUGGGCACUCCGCCCAACUGCAAGCCCGAGUGCAUGACAAGUGCAGAGUGU
......(((.(((((((((..((((((((..........(((((.((......)))))))......((....))..))))))))..((......))..))))))))).)))... (-26.33 = -27.03 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:06 2006