Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,523,152 – 4,523,272 |
Length | 120 |
Max. P | 0.512118 |
Location | 4,523,152 – 4,523,272 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -48.13 |
Consensus MFE | -36.10 |
Energy contribution | -36.52 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.21 |
Mean z-score | -2.11 |
Structure conservation index | 0.75 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4523152 120 - 22407834 CAAUGAGCAGGCUGUCUGCUCAUGCUUGCAACAUUACGUGGGUAGGGCGCCAAAUUGCCGACCGGAGUGUACAUCCGAUUCCGAGUGCCCUGGCAAUUUGGCGUGCAUAAAUCUGCGCUG ..((((((((.....))))))))(((..(........)..))).(.((((((((((((((((((((((.........)))))).))....)))))))))))))).).............. ( -48.30) >DroPse_CAF1 39073 120 - 1 UAAUGAUCAGCCCGUCUGCUCAUGCUUGCAACAUUAUGUGGGUAGGGCGCCAAAUUGCCGACCCGAGUGCACUUCGAACUCGGAGUGUGCCGGCAACAUGGCCUGCAUCAAUCUGCGGUG .........(((((....)...((((..((......))..))))))))((((..((((((......(..(((((((....)))))))..)))))))..))))(((((......))))).. ( -47.30) >DroGri_CAF1 39317 120 - 1 UAAUGAGCAACCUGUGUGCUCAUGCUUGCAACAUUAUGUGGGAAGGGCGCCAAAUUGCCGACCCGAGUGCACCUCGAACUCCGAGUGCUCUGGCAAUAUGGCUUGCAUCAAUCUACGCUG ...(((((((.......((((...((..((......))..))..))))((((.((((((......((.((((.(((.....))))))).)))))))).)))))))).))).......... ( -39.40) >DroEre_CAF1 38424 120 - 1 CAAUGAGCAUGCUGUCUGCUCAUGCUUGCAGCAUUACGUGGGUAGGGCGCCAAAUUGCCGGCCGGAGUGUACGUCCGACUCCGAGUGCCCCGGCAAUUUGGCCUGUAUCAAUCUGCGCUG .....((((((((((..((....))..)))))))......((((.((.((((((((((((((((((((.........)))))).)....))))))))))))))).)))).......))). ( -53.20) >DroMoj_CAF1 45990 120 - 1 UAAUGAGCAACCGGUGUGCUCAUGCUUGCAACAUUAUGUGGGUAGGGCGCCAAAUUGCCGGCCAGAGUGCACGUCAAACUCCGAGUGCGCUGGCAACUUGGCUUGCAUCAAUUUGCGCUG ......((((..(((((((((.((((..((......))..))))))))(((((.((((((((......((((.((.......)))))))))))))).)))))..)))))...)))).... ( -47.80) >DroAna_CAF1 38677 120 - 1 CAACGAGCAGGCCGUCUGCUCGUGCUUGCAACAUUACGUGGGCAGGGCUCCCAACUGCCGGCCGGAGUGCACCUCGGACUCCGAGUGCCCCGGCAAUCUGGCCUGCAUCAAUCUGCGGUG ....(((((((((....((((.((((..(........)..))))))))............(((((.(.((((.((((...)))))))))))))).....))))))).))........... ( -52.80) >consensus CAAUGAGCAGCCUGUCUGCUCAUGCUUGCAACAUUACGUGGGUAGGGCGCCAAAUUGCCGACCGGAGUGCACCUCGAACUCCGAGUGCCCCGGCAAUUUGGCCUGCAUCAAUCUGCGCUG .....(((.........((((.((((..(........)..))))))))((((.(((((((((((((((.........)))))).))....))))))).))))..(((......)))))). (-36.10 = -36.52 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:04 2006