| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 508,220 – 508,310 |
| Length | 90 |
| Max. P | 0.952509 |
| Location | 508,220 – 508,310 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.05 |
| Mean single sequence MFE | -16.00 |
| Consensus MFE | -8.29 |
| Energy contribution | -8.57 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 508220 90 - 22407834 ----------CAUUAGGCCCACUGAUGUGUAAACUGAAAAAC-UUUGAUA--AUAUUGCCAGCGUUUUCAAUUUGCGCAUAACACAAAACCA-AAUCCAAUGCG------ ----------.....((.......(((((((((.((((((..-.(((...--.......)))..)))))).))))))))).........)).-...........------ ( -14.59) >DroVir_CAF1 77059 73 - 1 ----------AAUUAAAGCCAUUGAUGUGUAAACUUAAAAAU-UGCGAUA--AUAUUGUCAGCGUUUUCAAUUUGCGCAUA---CAAAA--------------------- ----------...........((((((((((((.((.(((((-.((((((--....)))).))))))).))))))))))).---)))..--------------------- ( -14.30) >DroGri_CAF1 69640 73 - 1 ----------AAUUAAACCCACUGAUGUGUAAACUUAAAAAU-UCAGAUA--AUAUUGUCAGCGUUUUCAAUUUGCGCAUA---CAAAA--------------------- ----------............(((((((((((.((.(((((-.(.((((--....)))).).))))).))))))))))).---))...--------------------- ( -11.40) >DroMoj_CAF1 65888 73 - 1 ----------AAUUAAGCCCACUGAUGUGUAAACUUAAAAAU-UCCGAUA--AUAUUGUCAGCAUUUUCAAUUUGCGCAUA---CAAAA--------------------- ----------............(((((((((((.((.(((((-.(.((((--....)))).).))))).))))))))))).---))...--------------------- ( -11.80) >DroAna_CAF1 69036 100 - 1 UGGACCCUCAAAUAAAGCCCACUGAUGUGUAAACUGAAAAAC-UUUGAUA--AUAUUGUCAACGUUUUCAAUUUGCGCAUAACACAAAAACA-AAUCCAUUGCG------ ((((...........((....)).(((((((((.((((((..-.((((((--....))))))..)))))).)))))))))............-..)))).....------ ( -20.10) >DroPer_CAF1 70544 100 - 1 ----------CAUAAAGCCCACUGAUGUGUAAACUGAAAAACCUUUGAUAGUAUAUUGUCAGAGGGGUCAAUUUGCGCAUAACACAAAAACCAAUUCCAAUGCCUAACAA ----------..............(((((((((.(((....((((((((((....))))))))))..))).))))))))).............................. ( -23.80) >consensus __________AAUUAAGCCCACUGAUGUGUAAACUGAAAAAC_UUUGAUA__AUAUUGUCAGCGUUUUCAAUUUGCGCAUA___CAAAA_____________________ ........................(((((((((....(((((....((((......))))...)))))...))))))))).............................. ( -8.29 = -8.57 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:50 2006