Locus 1665

Sequence ID 2L_DroMel_CAF1
Location 4,515,276 – 4,515,373
Length 97
Max. P 0.565073
window2665

overview

Window 5

Location 4,515,276 – 4,515,373
Length 97
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 80.11
Mean single sequence MFE -22.97
Consensus MFE -13.27
Energy contribution -12.63
Covariance contribution -0.64
Combinations/Pair 1.27
Mean z-score -1.75
Structure conservation index 0.58
SVM decision value 0.06
SVM RNA-class probability 0.565073
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4515276 97 + 22407834
UUUUAA----UAAUAGCAAGUGUUUUACUGGGCGCCCAGUAAGC----AACCAAAACCACA---AAUUAGGUUUUUAUAAGCUGGUUUACGUCUUGACCUAACCACUA
......----....(((...(((((.(((((....)))))))))----)...((((((...---.....)))))).....)))((((...((....))..)))).... ( -21.90)
>DroPse_CAF1 30969 98 + 1
-UUUA--------GAGCGCAUGUUGUACUGGGCGCCCAGUAAGCAGCAAACCAAAACCACAUAAAAGUAUGUA-UAAAAAGCUGGUUUACGCCUUGGCCUACCUACUA
-..((--------((((((.((((.((((((....))))))))))))...........(((((....))))).-......)))(((....((....))..)))..))) ( -24.10)
>DroSec_CAF1 30029 96 + 1
-UUUAA----UAAUAGCAACUGUUUUACUGGGCGCCCAGUAAGC----AACCAAAACCACA---AAUUAGGUUUUUAUAAGCUGGUUUACGUCUUGACCUAACCACUA
-.....----....(((...(((((.(((((....)))))))))----)...((((((...---.....)))))).....)))((((...((....))..)))).... ( -21.80)
>DroEre_CAF1 30457 95 + 1
-UUUAA----UAAUAGCAAGUGUUUUACUGGGCGUCCAGUAAGA----AACCAAAACCACA---AAUUAGGUU-UUAUAAGCUGGUUUACGUCUUGACCUGACCACUA
-.....----....(((..((.(((((((((....)))))))))----.)).((((((...---.....))))-))....)))((((...((....))..)))).... ( -22.70)
>DroAna_CAF1 30791 98 + 1
-UUUAAGUUGUAAUAGCAGGUGUUGUACUGGGCGCCCAGUAAGC----AGCCUCAACCA-A---AAUCAAGUA-UUAUAAGCAGGUCUACGCCUUGGCCUAACUUCUA
-...(((((......(.((((....((((((....))))))...----.))))).....-.---.........-........(((((........))))))))))... ( -23.20)
>DroPer_CAF1 32624 98 + 1
-UUUA--------GAGCGCAUGUUGUACUGGGCGCCCAGUAAGCAGCAAACCAAAACCACAUAAAAGUAUGUA-UAAAAAGCUGGUUUACGCCUUGGCCUACCUACUA
-..((--------((((((.((((.((((((....))))))))))))...........(((((....))))).-......)))(((....((....))..)))..))) ( -24.10)
>consensus
_UUUAA____UAAUAGCAAGUGUUGUACUGGGCGCCCAGUAAGC____AACCAAAACCACA___AAUUAGGUA_UUAUAAGCUGGUUUACGCCUUGACCUAACCACUA
.........................((((((....))))))......................................((.(((((...((....))..))))))). (-13.27 = -12.63 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:54 2006