Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,513,868 – 4,513,958 |
Length | 90 |
Max. P | 0.568604 |
Location | 4,513,868 – 4,513,958 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 70.67 |
Mean single sequence MFE | -23.47 |
Consensus MFE | -10.69 |
Energy contribution | -11.05 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -1.63 |
Structure conservation index | 0.46 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4513868 90 + 22407834 ACCUGGCGUUGGUUUUUUAUUCAGCUGAUUAAUCCGAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG-AGUACAAGUACA----AGUUAGGUGU ((((((((((((........)))))...((((((((.(..((((.........))))..)))))))))-.(((....))).----.))))))).. ( -27.40) >DroPse_CAF1 29492 79 + 1 ACCUGGCGUUGGCCUUUGC-GGCUCUGAUUAAUCCAAUUGUGGUU--------------ACAGAUUAC-AGUACGUUUACGGUAUAGUUAGGUGU (((((((....(((...((-((((.(((((...(((....)))..--------------...))))).-))).)))....)))...))))))).. ( -20.70) >DroEre_CAF1 29071 89 + 1 ACCUGGCGUUGGUUUUUUG-UCAGCUGAUUAAUCCGAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG-AGUACAAGUACG----AGUUAGGUGU (((((((.(((....((((-(..(((..((((((((.(..((((.........))))..)))))))))-))))))))..))----)))))))).. ( -26.80) >DroYak_CAF1 18623 89 + 1 ACCUGGCGUUGGUUUUUUG-UCAGCUGAUUAAUCCGAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG-CGUACAAGUACA----AGUUAGGUGU (((((((.(((....((((-(..(((((....((((.(..((((.........))))..)))))))))-)..)))))..))----)))))))).. ( -27.70) >DroAna_CAF1 29427 78 + 1 ACCUGCUG---G----------CGCGGAUUAAUCCAGUUUCGCGUGUGGUAUUAUUGUAGCGGAUUAGAAGUACGAUUACG----AGUUAGGUGG (((((((.---(----------((((((..........)))))))...(((..((((((.(......)...))))))))).----)).))))).. ( -17.50) >DroPer_CAF1 31147 79 + 1 ACCUGGCGUUGGCCUUUGC-GGCUCUGAUUAAUCCAAUUGUGGUU--------------ACAGAUUAC-AGUACGUUUACGGUAUAGUUAGGUGU (((((((....(((...((-((((.(((((...(((....)))..--------------...))))).-))).)))....)))...))))))).. ( -20.70) >consensus ACCUGGCGUUGGUUUUUUC_UCAGCUGAUUAAUCCAAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG_AGUACAAGUACG____AGUUAGGUGU (((((((......................((((((..........................))))))...(((....)))......))))))).. (-10.69 = -11.05 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:54 2006