Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,491,465 – 4,491,579 |
Length | 114 |
Max. P | 0.889121 |
Location | 4,491,465 – 4,491,579 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.41 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -6.11 |
Energy contribution | -6.99 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.36 |
Mean z-score | -2.27 |
Structure conservation index | 0.30 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.889121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4491465 114 - 22407834 AAUUUGCCUUCAGAGCCAUCCUACUCGGCACCAAU------UCCAAAGCCUGGAAUCAUCAACGUUCCCUCGAUACCGGAACCUAUACCAUCAAUACCGCAAAAUCCCGUACAAGAGGUU ....((((....(((........)))))))...((------((((.....))))))...........((((..(((.(((........................))).)))...)))).. ( -18.46) >DroPse_CAF1 6986 114 - 1 AAUAUACCAUCACAACCAUC------ACCACCGAUUUAUGUACCUACUCCCGGAGUGGUAAAUAUCCCUUCGGUGCCACAACCUUCUCCUGCGGCACCCCAACAACCUAUGUUCGAUGUC ................((((------......(((.....((((.((((...))))))))...))).....((((((.((.........)).))))))................)))).. ( -23.70) >DroEre_CAF1 6810 114 - 1 AAUUUGCCCUCAGAGCCAUCUUAUCCGGCACCAAU------CCCAAAACCUGGAAUCAUCAAUAUUCCCUCAAUACCGCAACCUAUACCAUCAGCACCACAAAAUCCGGUGCAAGAGGUU .......((((.(((((.........)))......------..........(((((.......)))))......................)).(((((.........)))))..)))).. ( -20.60) >DroAna_CAF1 6844 114 - 1 AACAUUCCCUCGCAGCCAUC------ACCACCAAUCACGGUUCAAAAACCAGGAAUUAUAAAUAUUCCAUCGGUACCUCAGCCAACACCCUCCGCACCUCAGAACCCAAUACAGGAUGUU (((((((....(....)...------............(((((........(((((.......)))))...(((......)))..................))))).......))))))) ( -16.70) >DroPer_CAF1 7351 114 - 1 AAUAUACCAUCACAACCAUC------ACCACCGAUUUAUGUACCUACUCCCGGAGUGGUAAAUAUCCCUUCGGUGCCACAACCUUCUCCUGCGGCACCCCAACAACCUAUGUUCGAUGUC ................((((------......(((.....((((.((((...))))))))...))).....((((((.((.........)).))))))................)))).. ( -23.70) >consensus AAUAUACCAUCACAGCCAUC______ACCACCAAU____GUACCAAAACCCGGAAUCAUAAAUAUUCCCUCGGUACCACAACCUACACCAUCAGCACCCCAAAAACCUAUGCAAGAUGUU .......((((........................................(((((.......)))))...(((((.................)))))................)))).. ( -6.11 = -6.99 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:51 2006