Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,487,251 – 4,487,357 |
Length | 106 |
Max. P | 0.500000 |
Location | 4,487,251 – 4,487,357 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.23 |
Mean single sequence MFE | -16.40 |
Consensus MFE | -10.89 |
Energy contribution | -11.67 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.05 |
Mean z-score | -1.86 |
Structure conservation index | 0.66 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4487251 106 - 22407834 GAAUAUUACCCAAAAGUCAAAAACCCCCUACGCCAAUAUAUAAAUGUUUCUCUUAACAUUUAAAAACCCCAAAACAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................((((..(((......((((((((......)))))))).................((((.....))))...))))))).... ( -16.40) >DroSec_CAF1 2537 105 - 1 GAAUAUUACCCAAAAAUCAUAAACCCCCUGCGCCAAUUUAUAAAUGUUUAUCUUAACAUUUAGGAACCCCA-AACAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................((((((((.(((((.((((((((......))))))))((....)).-...))))).))...(((....))))))))).... ( -20.20) >DroEre_CAF1 2561 99 - 1 GAAUAUCACCCAAAAGUUAUAAACUCCUUGACCCAAUAUAAAAAUAUUUCUUACAACAUUUAAGAAC-------CAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................(((((.((((((((..((((..((((((.......)))))).-------...))))..))))))......))))))).... ( -12.60) >consensus GAAUAUUACCCAAAAGUCAUAAACCCCCUGCGCCAAUAUAUAAAUGUUUCUCUUAACAUUUAAGAACCCCA_AACAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................((((..(((......((((((((......)))))))).................((((.....))))...))))))).... (-10.89 = -11.67 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:50 2006