Locus 166

Sequence ID 2L_DroMel_CAF1
Location 503,065 – 503,160
Length 95
Max. P 0.699777
window254

overview

Window 4

Location 503,065 – 503,160
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 95.16
Mean single sequence MFE -17.67
Consensus MFE -17.08
Energy contribution -17.08
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.11
Structure conservation index 0.97
SVM decision value 0.35
SVM RNA-class probability 0.699777
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 503065 95 + 22407834
AAAGGUGUUAAUUUCGUCUGGCACCGGUGCUCAUCGAGGAGCCUUUCUUCAGCAUCUCUUCUUCCUUUCCAUUUCCUCGAACUUACCCAAAUAGU
...(((((((........)))))))((((....((((((((...............................))))))))...))))........ ( -19.98)
>DroSec_CAF1 48611 95 + 1
AAAGGUGUUAAUUUCGUCUGGCACCGCAGCUCAUCGAGGAGCCUUUCUUCAGCAUCCCUUCUUCAUUUCCAUUUCCUCGAACUUACCCAAAUAGU
...(((((((........)))))))........((((((((...............................))))))))............... ( -17.08)
>DroSim_CAF1 48734 95 + 1
AAAGGUGUUAAUUUCGUCUGGCACCGCAGCUCAUCGAGGAGCCUUUCUUCAGCAUCUCUUCUUCCUUUCCAUUUCCUCGAACUUAUCCAAAUAGU
...(((((((........)))))))........((((((((...............................))))))))............... ( -17.08)
>DroEre_CAF1 51540 95 + 1
AAAGGUGUUAAUUUUGUCUGGCACCGCAGCUCAUCGAGGAGCCUUUCCUCAGCAUCUUUUCUUCCUUUCCAUUUCCUCGAACUUAUCCAAAUAGU
...(((((((........)))))))........((((((((...............................))))))))............... ( -17.08)
>DroYak_CAF1 49526 94 + 1
AAAGGUGUUAAUUUUGUCUGGCACCGCUGCUCAUCGAGGAGCCUUUCCUCAGCAUCUU-UCUUCCUUUCCAUUUCCUCGAACUUAUCCAAAUAGU
...(((((((........)))))))........((((((((.................-.............))))))))............... ( -17.11)
>consensus
AAAGGUGUUAAUUUCGUCUGGCACCGCAGCUCAUCGAGGAGCCUUUCUUCAGCAUCUCUUCUUCCUUUCCAUUUCCUCGAACUUAUCCAAAUAGU
...(((((((........)))))))........((((((((...............................))))))))............... (-17.08 = -17.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:49 2006