Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,479,176 – 4,479,273 |
Length | 97 |
Max. P | 0.985012 |
Location | 4,479,176 – 4,479,273 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -18.00 |
Consensus MFE | -15.90 |
Energy contribution | -16.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.88 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.985012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4479176 97 - 22407834 AAAA-GACGAAGCGAGAAUCGCAUGAUGAAUGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU ....-.....((.(((((((((((.....))))((....))...............)).........((((((((((....))))))))))))))))) ( -18.70) >DroSec_CAF1 15179 98 - 1 AAAAUGACGAAGCAAGAAUCGCAUCAAGAAUGCACGAAAGUAAUAUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU .........((((.......((((.....))))((....)).........)))).............((((((((((....))))))))))....... ( -16.50) >DroSim_CAF1 15176 98 - 1 AAAAUGACGAAGCGAGAAUCGCAUCAAGAAUGCACGAAAGUAAUAUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU ........((.(((.....))).)).(((((((((....)).............................(((((((....))))))))))))))... ( -18.70) >DroEre_CAF1 16252 97 - 1 AAAU-GACGAAGCGAGAAUCGCACGAAGAAAGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU ....-.....((.(((((..((((....(((..((....))..))).)).))...............((((((((((....))))))))))))))))) ( -17.40) >DroYak_CAF1 15557 97 - 1 AAAA-GACGAAGCGAGAAUCGCAUGAAGAAUGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU ....-.....((.(((((((((((.....))))((....))...............)).........((((((((((....))))))))))))))))) ( -18.70) >consensus AAAA_GACGAAGCGAGAAUCGCAUGAAGAAUGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU .........((((.......((((.....))))((....)).........)))).............((((((((((....))))))))))....... (-15.90 = -16.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:43 2006