Locus 1655

Sequence ID	2L_DroMel_CAF1
Location	4,477,749 – 4,477,842
Length	93
Max. P	0.928182

overview

Window 0

Location	4,477,749 – 4,477,842
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	95.48
Mean single sequence MFE	-22.80
Consensus MFE	-21.34
Energy contribution	-21.34
Covariance contribution	-0.00
Combinations/Pair	1.07
Mean z-score	-1.39
Structure conservation index	0.94
SVM decision value	1.19
SVM RNA-class probability	0.928182
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4477749 93 + 22407834
GCUUGCAUAUGCAUAUUGGCUAUGGAAUUAAGAAAAUAAUUUUAUGCCUGGCAUGGGUUAGGGUUAGCCUGCGAUUUAGUUCGGAUUUGGGAG
.(((.((.((((.....(((.(((((((((......))))))))))))..))))((((((....)))))).(((......)))....)).))) ( -21.50)
>DroSec_CAF1 13763 93 + 1
GCUUGCAUAUUCAUAUUGGCUAUGGAAUUAAGAAAAUAAUUUUAUGCCUGGCAUGGGUUAGGGUUAGCCUGUGAUUUAGUUCGGAUUUGGGAG
.(((.((.((((.....(((.(((((((((......))))))))))))...(((((((((....))))))))).........)))).)).))) ( -24.20)
>DroSim_CAF1 13759 93 + 1
GCUUGCAUAUUCAUAUUGGCUAUGGAAUUAAGAAAAUAAUUUUAUGCCUGGCAUGGGUUAGGGUUAGCCUGUGAUUUAGUUCGGAUUUGGGAG
.(((.((.((((.....(((.(((((((((......))))))))))))...(((((((((....))))))))).........)))).)).))) ( -24.20)
>DroEre_CAF1 14833 92 + 1
GCUUGUACAUUC-UAUUGGCUAUGGAAUUAAGAAAAUAAUUUUAUGCCUGGCAUGGGUUAGGAUUAGCCUGUGAUUUAGUUCGGAUUUGGGGG
.(((.((.((((-....(((.(((((((((......))))))))))))...(((((((((....))))))))).........)))).)).))) ( -21.00)
>DroYak_CAF1 14142 92 + 1
GCUUGUACAUUC-UAUGGGCUAUGGAAUUAAGAAAAUAAUUUUAUGCCUGGCAUGGGUUAGGGUUAGCCUGUGAUUGAGUUCGGAUUUGGGAG
.(((.((.((((-...((((.(((((((((......)))))))))))))..(((((((((....))))))))).........)))).)).))) ( -23.10)
>consensus
GCUUGCAUAUUCAUAUUGGCUAUGGAAUUAAGAAAAUAAUUUUAUGCCUGGCAUGGGUUAGGGUUAGCCUGUGAUUUAGUUCGGAUUUGGGAG
.(((.((.((((.....(((.(((((((((......))))))))))))...(((((((((....))))))))).........)))).)).))) (-21.34 = -21.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:40 2006