Locus 1654

Sequence ID 2L_DroMel_CAF1
Location 4,475,672 – 4,475,762
Length 90
Max. P 0.843975
window2649

overview

Window 9

Location 4,475,672 – 4,475,762
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.63
Mean single sequence MFE -26.21
Consensus MFE -17.43
Energy contribution -17.52
Covariance contribution 0.09
Combinations/Pair 1.25
Mean z-score -2.38
Structure conservation index 0.67
SVM decision value 0.76
SVM RNA-class probability 0.843975
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4475672 90 + 22407834
CACUUGACGCUACAGAUACAAAUUUGUAUCUUAUCGGCGAUGUGGCCCUAAAAGGUUGCACCCG--ACUA--------CGUCGCCCACC-UCUCA-CGGUCG
.....((((....(((((((....)))))))..((((.(.((..(((......)))..))))))--)...--------))))....(((-.....-.))).. ( -25.90)
>DroSec_CAF1 11718 84 + 1
CACUUGAUACUACAGAUACAAAUUUGUAUCUUAUCGGCGAUGUGGCCCUAAAAGGUUGCACCC----------------GUCGCCCACC-UCUCA-CGGUUG
.....((((....(((((((....)))))))))))(((((((..(((......)))..))...----------------.))))).(((-.....-.))).. ( -24.60)
>DroSim_CAF1 11695 90 + 1
CACUUGAUACUACAGAUACAAAUUUGUAUCUUAUCGGCGAUGUGACCCUAAAAGGUUGCACCCG--ACCA--------CGUCGCCCACC-UCUCA-CGGUCG
.....((((....(((((((....)))))))))))((((((((..........(((((....))--))))--------))))))).(((-.....-.))).. ( -24.70)
>DroEre_CAF1 12703 90 + 1
CACUUGACACUACAGAUACAAAUUUGUAUCUUAUCGGCGAUGUGGCCCUAAAAGGUUGCUCCCG--ACCA--------CGUCGCCCACC-UCUCA-UGGUCG
.....(((.....(((((((....)))))))....((((((((((.((.....))(((....))--))))--------)))))))....-.....-..))). ( -26.80)
>DroYak_CAF1 12040 90 + 1
CACUUGACGUUACAGAUACAAAUUUGUAUCUUAUCGGCGAUGUGGCCCUAAAAGGUUGCUCCCG--ACCA--------CGUCGCCCACC-UCUCA-UGGUCG
.....(((((...(((((((....)))))))..((((.((.(..(((......)))..))))))--)..)--------))))....(((-.....-.))).. ( -27.90)
>DroAna_CAF1 14500 102 + 1
CACUUGACUUGACAGAUACAAAUUUGUAUCUUAUCGGUGGGCUCCACCUGAAAGGUUUCUCCUUCACCUCCAUCUGCCCAUCGCCUGUCCCCCCGUGGGCCG
..........((((((((((....))))))....((((((((......((((.((.....)))))).........))))))))..))))(((....)))... ( -27.36)
>consensus
CACUUGACACUACAGAUACAAAUUUGUAUCUUAUCGGCGAUGUGGCCCUAAAAGGUUGCACCCG__ACCA________CGUCGCCCACC_UCUCA_CGGUCG
.....(((.....(((((((....)))))))....(((((((..(((......)))..)....................)))))).............))). (-17.43 = -17.52 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:39 2006