| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,469,690 – 4,469,807 |
| Length | 117 |
| Max. P | 0.544077 |
| Location | 4,469,690 – 4,469,807 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -37.52 |
| Consensus MFE | -29.10 |
| Energy contribution | -28.77 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4469690 117 + 22407834 AUGGAGUGCGAGAUGUGUCCGGCGCACUGGCAUUAAUCCCCUUGCGCUGUGGCACCCAGCAAUCGGGCGUGUUCCACCUGGAAGUCAUGUAUGAAAAUCCAUAUAAGAAGGAACCAU .(((((..((.(((((((((((((((..((........))..))))))).)))))......)))...))..)))))..(((...((.((((((......)))))).)).....))). ( -38.90) >DroSec_CAF1 5750 104 + 1 AUGGAGUGCGAGAUGUGUCCGGCGCACUGGCAUUAAUCCCCUUGCGCUGUGGCACCCAGCAAUCCGGCGUGUUCCACCUGGAAAUCC-----------ACAU--AAGAUGGAACCAU .((((.(((.....((((((((((((..((........))..))))))).)))))...))).))))..(.((((((.((((....))-----------....--.)).))))))).. ( -37.20) >DroSim_CAF1 5744 116 + 1 AUGGAGUGCGAGAUGUGUCCGGCGCACUGGCAUUAAUCCCCUUGCGCUGUGGCACCCAGCAAUCCGGCGUGUUCCACCUGGAAAUCAUGUAUGGAAAUUCAUA-AAGAUGGAACCAU .((((.(((.....((((((((((((..((........))..))))))).)))))...))).))))(((((((((....))))..)))))((((...(((((.-...))))).)))) ( -39.80) >DroEre_CAF1 6647 117 + 1 AAGGAGUGCGAGAUGUGUCCGGCGCACUGGCAUUCAUCUCCUUGCGCUGCGGCACCCAGCAAUCCGGCGUGUUCCACCUGGAAAUCAUUUAUGGAAGUCCACUUAUGAAGGAACCAU ...((((((.((.((((.....)))))).))))))...((((...((((.(....)))))..(((((.(((...))))))))..((((...(((....)))...))))))))..... ( -38.50) >DroYak_CAF1 5770 117 + 1 AAGGAGUGCGAGAUGUGUCCGGUGCACUGGCAUUUAUCCCCUUGCGCUGCGGCACCCAGCAAUCCGGCGUGUUCCACCUGAAAGUCAUUGAUGGAAACCCACAUAUGAAGAAGCCAU ..(((.(((.....((((((((((((..((........))..))))))).)))))...))).)))((((((...))).......((((((.(((....))))).))))....))).. ( -37.20) >DroMoj_CAF1 5157 111 + 1 AGGGCGUGCGAGAAGUGUCCGGCGCAGUGGUAUUCAGCUCCUUGCGCUGUGGCACCCAACAGUCGGGUGUGUUCCAUCUUGAAUAAAAGGGUUAUUAU--G---UUUAUUCA-GCAU .(((((..(.....(((((((((((((.((.........)))))))))).)))))((.......)))..)))))....(((((((((...(....)..--.---))))))))-)... ( -33.50) >consensus AUGGAGUGCGAGAUGUGUCCGGCGCACUGGCAUUAAUCCCCUUGCGCUGUGGCACCCAGCAAUCCGGCGUGUUCCACCUGGAAAUCAUGUAUGGAAAUCCAUA_AAGAAGGAACCAU ..((((..((....((((((((((((..((........))..))))))).)))))((........))))..)))).......................................... (-29.10 = -28.77 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:38 2006