Locus 1651

Sequence ID 2L_DroMel_CAF1
Location 4,465,107 – 4,465,199
Length 92
Max. P 0.670849
window2645

overview

Window 5

Location 4,465,107 – 4,465,199
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 74.68
Mean single sequence MFE -28.42
Consensus MFE -7.77
Energy contribution -9.93
Covariance contribution 2.17
Combinations/Pair 1.06
Mean z-score -2.46
Structure conservation index 0.27
SVM decision value 0.29
SVM RNA-class probability 0.670849
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4465107 92 + 22407834
GACUCCCUCUCACGCUGCCAACACUGGCCAUUUCUCGCAUAUCCAACUACAGAUGAUGAUCAGCUG---------UUUGUUGUUUAUGUGGGAGC-GGCCUG
............(((.((((....))))....(((((((((..((((.((((.((.....)).)))---------)..))))..)))))))))))-)..... ( -31.10)
>DroSec_CAF1 1168 88 + 1
GACUCCCUCUCACGCUGCCAACACUGGUCAUUUUGCGCAUAUCCAACUACAGCU---GAUCAGCUG---------UUU-UUGUUUAUGUGGGAGC-GGCCUG
(.(((((......((.((((....))))......))(((((..(((..((((((---....)))))---------)..-)))..)))))))))))-...... ( -29.10)
>DroSim_CAF1 1170 89 + 1
GACUCCCUCUCACGCUGCCAACACUGGUCAUUUUGCGCAUAUCCAACUACAGCU---GAUCAGCUG---------UUUGUUGUUUAUGCGGAAGC-GGCCUG
............((((((((....)))).......((((((..((((.((((((---....)))))---------)..))))..))))))..)))-)..... ( -30.90)
>DroEre_CAF1 2055 87 + 1
GAGUA-CUCUCACGCUGCCAUCACUGGCUAUUUUGGGCAUCCCAAAC-ACAGCU---GAUCAGCUG---------UUGAUUGUUUAUGUGGGAGC-GGACUG
(((..-..))).((((.(((.((..(((...((((((...)))))).-((((((---....)))))---------).....)))..))))).)))-)..... ( -29.00)
>DroYak_CAF1 1174 88 + 1
GAGUC-CUCUCACGCUCCCAUCACUGGCCAUUUUGGGCACCUCCAACAACAGCU---GAUCAGCUG---------UUUAUUGUUUAUACGGGAGU-GGCCUG
(((..-..))).(((((((.......(((......))).........(((((((---....)))))---------))............))))))-)..... ( -29.00)
>DroAna_CAF1 3741 88 + 1
-CGUCCAUCUCACGAUGUCAUCUCUA-UAAUUUCUUCCACCUCU---------U---GGUCAGCUGGUAUUGUUGAUUAUUGUUGAUUUGGGAGAAGGCCCU
-.(((((((....)))).........-....((((((((..((.---------(---(((((((.......)))))))).....))..)))))))))))... ( -21.40)
>consensus
GACUCCCUCUCACGCUGCCAACACUGGCCAUUUUGCGCAUAUCCAACUACAGCU___GAUCAGCUG_________UUUAUUGUUUAUGUGGGAGC_GGCCUG
......((((((((..((((....)))).....................(((((.......)))))....................))))))))........ ( -7.77 =  -9.93 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:34 2006