Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,464,585 – 4,464,701 |
Length | 116 |
Max. P | 0.505595 |
Location | 4,464,585 – 4,464,701 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.20 |
Mean single sequence MFE | -27.81 |
Consensus MFE | -16.90 |
Energy contribution | -16.52 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.39 |
Mean z-score | -1.63 |
Structure conservation index | 0.61 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4464585 116 + 22407834 UACGAGGAAGUUUCACCUUGAUAACCAUUUCCGUUCUCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCAAGGCCUUCGCUAUGAAGCAGCAC-CUCAAGCAGCACAGCC ...((((..(((.((((.(((.(((.......))).)))....)))))))((.(((....))).))...((((..((.(((....))).))..))))..)-)))..((......)). ( -25.30) >DroSec_CAF1 647 116 + 1 UACGAGGAAGUUUCACCUUAAAAACCAUUUCCGUUCCCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCACGGCCUUUGCUCUCAAACAGCAC-CUCAAGGAACACAGCC ...((((........))))............(((((((.....)).))))).........(((((((....(((....)))...((((.......)))).-.....))))))).... ( -27.20) >DroSim_CAF1 648 116 + 1 UACGAGGAAGUUUCACCUUAAAAACCAUUUCCGUUCUCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCACGGCCUUUGCUCUCAAGCAGCAC-CUCAAGGAACACAGCC .....((..(((.((((..........................)))))))..))......(((((((....(((....)))..(((((....)))))...-.....))))))).... ( -26.37) >DroEre_CAF1 1593 116 + 1 UACGAGGAAAUUUCACCUUCAAAACCAUCUCCGUUCUCACACUGGGGAACGACCAUUCAAGUGUUCCCACUGCUUGAAGGCCUUUGCUCUUAACCAGCAC-CUCAAGGUACAUAUUC ...((((........(((((((.........(((((((......)))))))........((((....))))..)))))))....((((.......)))))-)))............. ( -28.40) >DroYak_CAF1 675 116 + 1 UACGAGAAAAUUUCACCUUCAAAACCAUAUUCGUUCUCACACGGGCGAACGUCCAUUCCAGUGUCCCCACUGCCCCAAGGCCUUUGCCCUGAAGCAGCAC-CUCAAGGAACACAGUC ...(((((.........................)))))....((((....))))......((((.....((((..((.(((....))).))..))))..(-(....)).)))).... ( -23.41) >DroAna_CAF1 1617 116 + 1 UGAAAGAAAAUCUGGUUAUGAGGAGCACGUUCGCACUCAUACAGGGGAGCGACCUUACAAGUGUUCCUUCUGCUCCAAGGCCUUUGCGC-AAAGCAGCACUCUCAAGGGCCAUCUUC ...((((.....(((.((.(((((((((..((((.(((......))).))))........))))))))).))..))).((((((((.((-......)).....)))))))).)))). ( -36.20) >consensus UACGAGGAAAUUUCACCUUAAAAACCAUUUCCGUUCUCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCAAGGCCUUUGCUCUCAAGCAGCAC_CUCAAGGAACACAGCC ...((((........))))............(((((((.....)).))))).........(((((((....(((....)))....((.........))........))))))).... (-16.90 = -16.52 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:34 2006