Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,462,324 – 4,462,444 |
Length | 120 |
Max. P | 0.724616 |
Location | 4,462,324 – 4,462,444 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.22 |
Mean single sequence MFE | -39.55 |
Consensus MFE | -22.12 |
Energy contribution | -21.07 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.46 |
Mean z-score | -1.77 |
Structure conservation index | 0.56 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4462324 120 + 22407834 CCUCCACAGCUUGGGUACUAUUUGCAUUUGCAGCAAUACGCUGCCGGCCUUGUCGCAUGUGCCCAGAACGUUGGCCAGUGUCCACAGGCAACUGCGCUUGAGGCGUUCGGCCUUGCCAUC ...........(((((((....(((....(((((.....))))).(((...)))))).)))))))(((((((((((((((((....))).)))).)))...)))))))(((...)))... ( -43.90) >DroPse_CAF1 2608 120 + 1 UUUCCACAAUUUGGGGACUAUCUGCAUUUGCAGCAGUGUUUUGGCUGCCUUCUCGCAAGUGGCCAACAUGUUGGCCAGUGUCCAAAGACAGCUUCGUUUUAGCCGCUCCUCCUUUCCAUC ............(((((((..((((....)))).))).....(((((......((.((((((((((....))))))..((((....))))))))))...)))))....))))........ ( -33.80) >DroGri_CAF1 3217 120 + 1 UUUCCAUAAUUUGGUUGCCAAUUGCAUUUGAAGCAAUGUUUUGGCCGACUUGCUGCAUGUGGCUAUAAUGUUGGCCAAUGUCCAGAGGCAACUGCGCUUCAAGCGCGGCUCCUGACUAUU ...((.......(((((((.(((((.......)))))...((((((((((((..((.....))..))).)))))))))........)))))))((((.....))))))............ ( -40.20) >DroYak_CAF1 2368 120 + 1 CCUCCACAACUUGGGUACUAGUUGCAUUUGCAGCAAAAUCUUGCCGGCCUUAUCGCAUGUGGCCAGAAUGUUGGCCAGUGUCCACAGGCAACUGCGCUUGAGGCGUUCGGCCUUGCCAUC .............((((...(((((....)))))........((((((((((.((((..(((((((....))))))).((((....))))..))))..))))))...))))..))))... ( -42.00) >DroMoj_CAF1 2693 120 + 1 UUUCCACAAUUUGCUGGCCAAUUGCAUUUGCAGCAACAUGCUGGCCGACUUGCUGCACGUGGCCAAAAUGUUGGCCAGCGUCCAAAGGCAACUGCGCUUCAGUCGCGGCUCCUGAUUGUC .....((((((....((((....(((.((((......((((((((((((..((((....))))......))))))))))))......)))).)))((.......))))))...)))))). ( -43.60) >DroPer_CAF1 2602 120 + 1 UUUCCACAAUUUGGGGACUAUCUGCAUUUGCAGCAGUGUUUUGGCUGCCUUCUCGCAAGUGGCCAACAUGUUGGCCAGUGUCCAAAGACAGCUUCGUUUUAGCCGCUCCUCCUUUCCAUC ............(((((((..((((....)))).))).....(((((......((.((((((((((....))))))..((((....))))))))))...)))))....))))........ ( -33.80) >consensus UUUCCACAAUUUGGGGACUAUUUGCAUUUGCAGCAAUAUUUUGGCCGCCUUGUCGCAUGUGGCCAAAAUGUUGGCCAGUGUCCAAAGGCAACUGCGCUUCAGGCGCUCCUCCUUACCAUC ...........(((.......((((.......))))......(((.........((((.(((((((....)))))))))))...(((((......))))).)))...........))).. (-22.12 = -21.07 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:32 2006