| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,461,438 – 4,461,536 |
| Length | 98 |
| Max. P | 0.528759 |
| Location | 4,461,438 – 4,461,536 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -17.67 |
| Energy contribution | -18.07 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4461438 98 + 22407834 AUUUGACUCAGUCUCCGAACUGGAGGUGCACAACCA---------CAAUGCCCACAGGGGCAAUGAACUGAACGCC---GACGACGAAGCCAAAAGGCGUCAAAUAAUCG (((((((...((((((.....)))((((..((....---------((.(((((....))))).))...))..))))---)))......(((....))))))))))..... ( -31.10) >DroGri_CAF1 2156 107 + 1 AUUUGACUCCGUUAGCGAACUGGAGAUUCACAACGGUCUUCAUCACAACGAACAA---CGCAAUGUCAGCAAUGCCAAAGACGACGACGCUCAACGGCGUCGCAUAAUCG ....(((.(((((((((...((((((((......))))))))......((.....---.(((.((....)).)))......))....)))).))))).)))......... ( -27.50) >DroSec_CAF1 1462 98 + 1 AUUUGACUCAGUCUACGAACUGGAGGUGCACAACCA---------CAAUGCCCAUAGGGGCUAUGAACUGAACGCC---GACGACGAAGCCAAAAGGCGUCAAAUAAUCG (((((((...(((..((.......(((.....))).---------((..((((....))))..)).......))..---)))......(((....))))))))))..... ( -26.40) >DroSim_CAF1 1492 98 + 1 AUUUGACUCAGUCUACGAACUGGAGGUGCACAACCA---------CAAUGCCCACAGGGGCUGUGCACUGAACGCC---GACGACGAAGCCAAAAGGCGUCAGAUAAUCG (((((((...(((..((...((..((((((((....---------....((((....))))))))))))...)).)---)..)))...(((....))))))))))..... ( -32.20) >DroEre_CAF1 1481 98 + 1 AUUUGACUCGGUCUCCGAACUGGAGGUCCACAACCA---------CAAUGUCCAUAGGGGCAAUGAACUGAACGCC---GACGACGAAGCCAAAAAGCGUCAAAUAAUCG ((((((((((((((((.....))))...........---------((.(((((....))))).))........)))---)).......((......)))))))))..... ( -25.50) >DroYak_CAF1 1486 98 + 1 AUUUGACUCGGUCUCCGAACUGGAGGUACACAAUCA---------CAAUGUCCACAGGGGCAACGAACUGAACGCC---GAAGACGAAGCCAAAAGGCGUCAAAUAAUCG ((((((((((((((((.....))))...........---------...(((((....)))))...........)))---)).......(((....))))))))))..... ( -28.00) >consensus AUUUGACUCAGUCUCCGAACUGGAGGUGCACAACCA_________CAAUGCCCACAGGGGCAAUGAACUGAACGCC___GACGACGAAGCCAAAAGGCGUCAAAUAAUCG (((((((...(((...........(((.....)))..............((((....)))).....................)))...(((....))))))))))..... (-17.67 = -18.07 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:31 2006