Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,453,587 – 4,453,689 |
Length | 102 |
Max. P | 0.530501 |
Location | 4,453,587 – 4,453,689 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.38 |
Mean single sequence MFE | -41.67 |
Consensus MFE | -16.07 |
Energy contribution | -16.79 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.24 |
Mean z-score | -1.85 |
Structure conservation index | 0.39 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4453587 102 + 22407834 GAUCGAAG---CACCGGC---CUGCUCGUAGUAACCUUGCCAGGCCUGGUAUCCCUGCCAAUAGGUGC---UGGUGGGGUCGUAGUACUGCGAGUAGUCGGUGCCACCUG---------C .......(---(((((((---.(((((((((((((((..((((((((((((....))))...)))).)---)))..)))).....)))))))))))))))))))......---------. ( -53.60) >DroVir_CAF1 3639 114 + 1 AAUUGAAGGAGCAGCGCC---CUGCUCAUAAUAGCCCUGCCAGGCAUUAUAGCCCUGCCAGUAGGUGC---UGGUUGGAUCGUAAUAUUGCGAGUAAUCGGCGCCGCCAGCACCGGUCGA ........((((((....---))))))......((((((.(((((......).)))).)))..(((((---((((.((.(((((....)))))((.....)).))))))))))))))... ( -42.50) >DroGri_CAF1 4191 114 + 1 AAUCGAUGGAGCCGCUGC---CUGUUCGUAGUAUCCCUGCCAGGCAUUGUAGCCCUGCCAAUAGCUGCUGCUGCUGGGAUCAUAAUACUGCGCAUAAUC---CCCACCAGCGCCAGUUGA .......((.((..((((---(((...((((.....))))))))))..)..))))......((((((.(((((.((((.....................---)))).))))).)))))). ( -35.40) >DroEre_CAF1 4072 102 + 1 GAUCGAGG---CACCGGC---CUGCUCGUAGUAACCCUGCCAGGCCUGGUAUCCCUGCCAAUAGGUGC---UGGUUGGGUCGUAGUACUGCGAAUAGUCAGUACCACCUC---------C ....((((---....(((---(((...((((.....))))))))))(((((....)))))...(((((---((..((..(((((....))))).))..))))))).))))---------. ( -42.50) >DroAna_CAF1 4138 111 + 1 AAUUGAGG---GACCGCCGCUUUGCUCAUAGUAUCCCUGCCAAGCAUUGUAGCCCUGCCAGUAGGUGC---UGGUGGGGUCAUAGUAUUGAGAGUAAUCCGUACCGCUGC---UGGUCGA ........---((((((.((.((((((...(((....)))(((..(((((..(((..(((((....))---)))..)))..))))).))).))))))........)).))---.)))).. ( -38.20) >DroMoj_CAF1 3793 114 + 1 UAUUGAAGGCGCUGCGCC---UUGUUCAUAAUAGCCCUGCCAAGCAUUGUAGCCCUGCCAGUAGGUGC---UGGUCGGGUCGUAAUAUUGCGAAUAAUCAGUGCCGCCUGCACUUGUUGA ...((.(((((..((((.---((((((.(((((((........)).(((..((((.((((((....))---)))).))))..)))))))).))))))...))))))))).))........ ( -37.80) >consensus AAUCGAAG___CACCGCC___CUGCUCAUAGUAACCCUGCCAGGCAUUGUAGCCCUGCCAAUAGGUGC___UGGUGGGGUCGUAAUACUGCGAAUAAUCAGUGCCACCUG_____GU_GA .....................((((((.(((((((((..(((.(((.......((((....)))))))...)))..)))).....))))).))))))....................... (-16.07 = -16.79 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:30 2006