Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,439,178 – 4,439,276 |
Length | 98 |
Max. P | 0.851860 |
Location | 4,439,178 – 4,439,276 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -19.74 |
Energy contribution | -19.66 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.68 |
Structure conservation index | 0.84 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4439178 98 - 22407834 CAAGAAUAAACCAUCCAAACAUCCUGAAGCAUCCGCGCAUCCAAACAUCCAAGC-GCCCAGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUC (((((((((.((((((((.......((.((....((((..............))-))....)).)).......)))).....))))))))))))).... ( -23.78) >DroSec_CAF1 44553 98 - 1 CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCGAGC-GCCCAGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUC (((((((((.((((..............((....((((.((.........))))-))....))..(((......))).....))))))))))))).... ( -23.50) >DroSim_CAF1 48864 98 - 1 CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCGAGC-GCCCAGGCAUCCAACUACUUGGCCAUUGUGGUUGUUCUUGGCUC (((((((((.((((..............((....((((.((.........))))-))....))..((((....)))).....))))))))))))).... ( -23.30) >DroEre_CAF1 46892 99 - 1 CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCAAGAAGCCCGGGCAUCCAUCUACUUGGCCAUUGUGGUUGUACUUGGCUG ((((....((((((..........(((.((....))))).........(((((.((...((....))..)).))))).....))))))...)))).... ( -19.30) >DroYak_CAF1 45412 99 - 1 CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCAAGUAGCCCGGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUG (((((((((.((((..........(((.((....))))).........((((((((...((....))..)))))))).....))))))))))))).... ( -28.10) >consensus CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCAAGC_GCCCAGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUC (((((((((.(((...........(((.((....)))))..........(((...(((.((...........)).)))..))))))))))))))).... (-19.74 = -19.66 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:28 2006