Locus 1643

Sequence ID 2L_DroMel_CAF1
Location 4,432,203 – 4,432,295
Length 92
Max. P 0.528420
window2636

overview

Window 6

Location 4,432,203 – 4,432,295
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -12.80
Consensus MFE -6.70
Energy contribution -7.62
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -1.95
Structure conservation index 0.52
SVM decision value -0.01
SVM RNA-class probability 0.528420
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4432203 92 - 22407834
CCUGCGACUUUUGG-UUGGAUUUUGGCUCC--UUUUUUAUGGUCGCACAUAAAAACGCACAUCAUUAUAAUUUCAAUGACAUUA-AAGUCCAUAUC
..............-.(((((((((((...--.((((((((......)))))))).))...(((((........)))))...))-))))))).... ( -16.50)
>DroPse_CAF1 49153 88 - 1
CCUCCGACU---CG-CUUUCUUUUCUCU-U--UUUUUUAUGGUCGUACAUAAAAACACACAUCAUUAUAAUUUCAAUGAUAUUA-AAGUCCAUAUC
.....((((---..-.............-.--.((((((((......)))))))).....((((((........))))))....-.))))...... ( -11.20)
>DroGri_CAF1 52506 84 - 1
-CUCUCUCU---CU-CUGGCUUUGC--G-U--UUUUUUAUGGUUGCACAUAA-AGCACACAUAAUUAUAAUUUCAAUGAUAUUU-GAGUUCAUAUC
-(((....(---(.-.(((..(((.--.-.--....(((((..(((......-.)))..)))))...)))..)))..)).....-)))........ (  -8.20)
>DroEre_CAF1 39884 93 - 1
CCUCCGGCUUCUGGACUGGAUUUCGGCUCC--CUUUUUAUGGUCGCACAUAAAAACACACAUCAUUAUAAUUUCAAUGACAUUA-AAGUCCCUAUC
..(((((...)))))..((((((..(....--.((((((((......))))))))......(((((........)))))..)..-))))))..... ( -15.90)
>DroWil_CAF1 65656 89 - 1
--GCCCACU---CU--UUUCUUUCGACUUCUUUUUUUUAUGGUUGCCCAUAAAAACACACAUCAUUAUAAUUUCAAUGAUAUUAAAAGUCCAUAUC
--.......---..--........(((((....(((((((((....))))))))).....((((((........)))))).....)))))...... ( -13.80)
>DroPer_CAF1 49008 88 - 1
CCUCCGACU---CG-CUUUCUUUUCUCU-U--UUUUUUAUGGUCGUACAUAAAAACACACAUCAUUAUAAUUUCAAUGAUAUUA-AAGUCCAUAUC
.....((((---..-.............-.--.((((((((......)))))))).....((((((........))))))....-.))))...... ( -11.20)
>consensus
CCUCCGACU___CG_CUGGCUUUUCGCU_C__UUUUUUAUGGUCGCACAUAAAAACACACAUCAUUAUAAUUUCAAUGAUAUUA_AAGUCCAUAUC
.....((((........................((((((((......)))))))).....((((((........))))))......))))...... ( -6.70 =  -7.62 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:26 2006