Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,430,012 – 4,430,103 |
Length | 91 |
Max. P | 0.879734 |
Location | 4,430,012 – 4,430,103 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -25.89 |
Energy contribution | -27.28 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.06 |
Mean z-score | -2.93 |
Structure conservation index | 0.79 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4430012 91 + 22407834 UAGUGGCGGCGUCGCCACCGACGCCUUAAUGUAUGCUACAUUGCGGCCACUUUUAUCUGCUUGGCAUUAUCCUUGUACUUGAUGCUGG-GUG .(((((((((((((....))))))).(((((((...)))))))..)))))).......(((..((((((..........))))))..)-)). ( -37.30) >DroSec_CAF1 35505 91 + 1 UAGUGGCGGCGUCGCCACCGACGCCUUAAUGUAUGCUACAUUGCGGCCACUUUUAUCUGCUUGGCAUUAUCCUUGUACUUGAUGCUGG-GUG .(((((((((((((....))))))).(((((((...)))))))..)))))).......(((..((((((..........))))))..)-)). ( -37.30) >DroSim_CAF1 39114 91 + 1 UAGUGGCGGCGUCGCCACCGACGCCUUAAUGUAUGCUACAUUGCGGCCACUUUUAUCUGCUUGGCAUUAUCCUUGUACUUGAUGCUGG-GUG .(((((((((((((....))))))).(((((((...)))))))..)))))).......(((..((((((..........))))))..)-)). ( -37.30) >DroEre_CAF1 37660 91 + 1 UAGUGGCGGCGUCGCCAACGACGCCUUAAUGUAUGCUACAUUGCGGCCACUUUUAUCUGCUUGGCAUUAUCCUUGUACUUGAUGAUGG-GUG .(((((((((((((....))))))).(((((((...)))))))..)))))).............(((((((.........))))))).-... ( -30.60) >DroYak_CAF1 36412 91 + 1 UAGUGGCGGCGUCGCCACCGACGCCUUAAUGUAUGCUACAUUGCGGCCACUUUUAUCUGCUUGGCAUUAUCCUUGUACUUCAUGAUGG-GUG .(((((((((((((....))))))).(((((((...)))))))..))))))((((((((....(((.......)))....)).)))))-).. ( -29.40) >DroAna_CAF1 38413 86 + 1 CAGUGGC------GCCACCGACGCCUUAAUGUAUGCUACAUUGCGGCCACUUUUAUCUGCUUGGCAUUAUCCUUGUACUUGAUGCCGCAGCG .((((((------(....)..(((...((((((...))))))))))))))).......(((((((((((..........)))))))).))). ( -25.40) >consensus UAGUGGCGGCGUCGCCACCGACGCCUUAAUGUAUGCUACAUUGCGGCCACUUUUAUCUGCUUGGCAUUAUCCUUGUACUUGAUGCUGG_GUG .(((((((((((((....))))))).(((((((...)))))))..)))))).......(((((((((((..........))))))))).)). (-25.89 = -27.28 + 1.39)
Location | 4,430,012 – 4,430,103 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -22.90 |
Energy contribution | -23.90 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.87 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4430012 91 - 22407834 CAC-CCAGCAUCAAGUACAAGGAUAAUGCCAAGCAGAUAAAAGUGGCCGCAAUGUAGCAUACAUUAAGGCGUCGGUGGCGACGCCGCCACUA ...-................((......))...........((((((...((((((...))))))..(((((((....))))))))))))). ( -26.90) >DroSec_CAF1 35505 91 - 1 CAC-CCAGCAUCAAGUACAAGGAUAAUGCCAAGCAGAUAAAAGUGGCCGCAAUGUAGCAUACAUUAAGGCGUCGGUGGCGACGCCGCCACUA ...-................((......))...........((((((...((((((...))))))..(((((((....))))))))))))). ( -26.90) >DroSim_CAF1 39114 91 - 1 CAC-CCAGCAUCAAGUACAAGGAUAAUGCCAAGCAGAUAAAAGUGGCCGCAAUGUAGCAUACAUUAAGGCGUCGGUGGCGACGCCGCCACUA ...-................((......))...........((((((...((((((...))))))..(((((((....))))))))))))). ( -26.90) >DroEre_CAF1 37660 91 - 1 CAC-CCAUCAUCAAGUACAAGGAUAAUGCCAAGCAGAUAAAAGUGGCCGCAAUGUAGCAUACAUUAAGGCGUCGUUGGCGACGCCGCCACUA ...-................((......))...........((((((...((((((...))))))..(((((((....))))))))))))). ( -27.70) >DroYak_CAF1 36412 91 - 1 CAC-CCAUCAUGAAGUACAAGGAUAAUGCCAAGCAGAUAAAAGUGGCCGCAAUGUAGCAUACAUUAAGGCGUCGGUGGCGACGCCGCCACUA ...-................((......))...........((((((...((((((...))))))..(((((((....))))))))))))). ( -26.90) >DroAna_CAF1 38413 86 - 1 CGCUGCGGCAUCAAGUACAAGGAUAAUGCCAAGCAGAUAAAAGUGGCCGCAAUGUAGCAUACAUUAAGGCGUCGGUGGC------GCCACUG .(((..(((((..............))))).)))...........(((..((((((...))))))..)))..(((((..------..))))) ( -23.34) >consensus CAC_CCAGCAUCAAGUACAAGGAUAAUGCCAAGCAGAUAAAAGUGGCCGCAAUGUAGCAUACAUUAAGGCGUCGGUGGCGACGCCGCCACUA ....................((......))...........((((((...((((((...))))))..(((((((....))))))))))))). (-22.90 = -23.90 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:22 2006