Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,417,727 – 4,417,828 |
Length | 101 |
Max. P | 0.989650 |
Location | 4,417,727 – 4,417,828 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.04 |
Mean single sequence MFE | -37.96 |
Consensus MFE | -31.38 |
Energy contribution | -31.30 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.24 |
Mean z-score | -2.28 |
Structure conservation index | 0.83 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4417727 101 - 22407834 AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUUGAGCCGAGCUGGGGGAUCCUUGAAAGCAUUGCCAGCCGGAGG-GUUUUCCCUGCUUGACUUGACUG .....((((((((.((((.....))(..((((((.....(((.(((((.((...((....))..)).))))))))...-..))))))..))).)))))))). ( -36.90) >DroSec_CAF1 23225 99 - 1 AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCCGAGCUGGCGGACCCUUGAAAGCAUCGCUAGCCGGAGG-GUUUCCCCAGCUUGACUUG--UG ..(((((((((((...((.....)).((((((((.....(((.((((((((...((....))..)))))))))))...-.))))))))))))))))))--). ( -43.60) >DroSim_CAF1 24732 99 - 1 AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCCGAGCUGGCGGAUCCUUGAAAGCAUUGCCAGCCGGAGG-GUUUCCCCAGCUUGACUUG--UG ..(((((((((((...((.....)).((((((((.....(((.((((((((...((....))..)))))))))))...-.))))))))))))))))))--). ( -43.90) >DroEre_CAF1 23297 100 - 1 AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCUGACCUGGUGGAUCCUUGAAAACAUAGCCCGCCGGAGGGGAUUCCUCUGCUUGACUUG--UG ..(((((((((((....(((...((.((((..((.....))..)))).))......((....))......)))(((((.....)))))))))))))))--). ( -33.90) >DroYak_CAF1 23641 100 - 1 AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCUGACCUGGCGGAUCCUUGAAAGCAAUGCCAGCCGGAGGGGUUUUCUUAGCUUGACUUG--UG ..(((((((((((....((.((...((.(((.((.....))..))).))..))))..((((((....((....))....))))))...))))))))))--). ( -31.50) >consensus AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCCGAGCUGGCGGAUCCUUGAAAGCAUUGCCAGCCGGAGG_GUUUCCCCAGCUUGACUUG__UG ...((((((((((...((.....))..(((((((.....(((.(((((((...............)))))))))).....))))))).)))))))))).... (-31.38 = -31.30 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:20 2006