Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 494,813 – 494,929 |
Length | 116 |
Max. P | 0.542013 |
Location | 494,813 – 494,929 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.21 |
Mean single sequence MFE | -29.49 |
Consensus MFE | -18.84 |
Energy contribution | -21.04 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.67 |
Structure conservation index | 0.64 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 494813 116 - 22407834 GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA----AAUGAUUCAAAAUCUAUUAGUGGAGUCAUUCGCCUGUUGGCUA ..(((((((((((((((((((((.......((..(((.((.....)).)))..))((((((((..........----.))))))))..)))).)))))))))..........)))))))) ( -31.70) >DroSec_CAF1 40492 116 - 1 GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA----AAUGAUUCAAAAUCUGUUAGUGGAGUCAUUCGCCUGUUGGCUA ..(((((((((((((((((((((.......((..(((.((.....)).)))..))((((((((..........----.))))))))..)))).)))))))))..........)))))))) ( -31.70) >DroSim_CAF1 40680 116 - 1 GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA----AAUGAUUCAAAAUCUAUUAGUAGAGUCAUUCGCCUGUUGGCUA ..((((((((....((..((.((((.((((.(..(((.((.....)).)))..))))).)))).)).......----((((((((..............)))))))).))..)))))))) ( -31.04) >DroEre_CAF1 41323 109 - 1 -----------UUCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAGGCGGAAAUGAAUGAAUAAUGCUAGAUUUAAAUAAGUGAAUCAAGAAUAAAUAGUGGAGGCAUUCGCCUGUUGGCUG -----------(((((((((.((....(((((..(((((.....)))))...)))))....)).)).((((((......)))))).........))))))).......(((....))).. ( -23.20) >DroYak_CAF1 40931 112 - 1 GAUAGCCCGUUUCCGCUAAGGAUGAGGCAUUUUGUUUGCGGAA-ACGGAAAUGAAUGCAUCAUGCUAAACUUA----AGUGAAUAAAGAGUCAACAAGUAA---AUAAUCCUGUUGGUUA ..((((((((((((((..((((((...))))))....))))))-))))..((((.....))))))))......----...........(..(((((.(...---.....).)))))..). ( -29.80) >consensus GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA____AAUGAUUCAAAAUCUAUUAGUGGAGUCAUUCGCCUGUUGGCUA ..((((........))))((.((((.((((.(..(((.((.....)).)))..))))).)))).))...........((((((((..............)))))))).(((....))).. (-18.84 = -21.04 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:47 2006