Locus 1637

Sequence ID 2L_DroMel_CAF1
Location 4,402,011 – 4,402,131
Length 120
Max. P 0.716110
window2627

overview

Window 7

Location 4,402,011 – 4,402,131
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -43.90
Consensus MFE -20.94
Energy contribution -21.33
Covariance contribution 0.40
Combinations/Pair 1.50
Mean z-score -2.12
Structure conservation index 0.48
SVM decision value 0.39
SVM RNA-class probability 0.716110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4402011 120 - 22407834
UGCGGGUGGCAGGUAACUGGUCACGGUAUCCGAUGGCAAUGCAGCCUUGGGAUCCUGUGACGGUGAUGGAUACUUUGUGUUCAACGGCGGAAAGGAGUACGUAUCGCCUGGAGAAACAUA
..((((((..(.(((.((.(((((((.((((.(.(((......))).).)))).)))))))(.((.(((((((...))))))).)).)....))...))).)..)))))).......... ( -43.70)
>DroVir_CAF1 9424 120 - 1
AGCUGGCGGCAAAUAACUAGAUAUCGUAUCCGAGGGCUGUGCCGCCUUGGGAUCCUGCGCCGGCGAUGGGUAUUUUGUGUUGAGCGGCGGAAAGGAGUACGUAUCCUUGGUGGACAGAUA
..(((.(.((.........((((.(((((((.(((((......))))).)))((((.(((((.(((((.(.....).)))))..)))))...)))).))))))))....)).).)))... ( -38.22)
>DroEre_CAF1 7646 120 - 1
UGCGGGUGCCAAGUAACUUGUCACAGUAUCCGAGGGCAAUGCAGCCUUUGGAUCCUGUGACGGUGAUGGAUACUUUGUGUUCAACGGUGGAAACGAGUAUGUAUCGCCUGGUGAAACAUA
...(..(((((........(((((((.((((((((((......)))))))))).)))))))(((((((.((((((.((.((((....)))).)))))))).))))))))))))...)... ( -52.60)
>DroWil_CAF1 9877 120 - 1
AGCAGGUGGUAGGUAACUGGUAACAGUGUCCGAGGGUAAUGCAGCCUUAGGGUCCUGCGAUGGCGAUGGAUAUUUCGUAUUCAAUGGAGGAAAUGAAUAGGUAUCCGAGGGCGAAGCAUA
.((..((.(((((..((((....)))).(((.(((((......))))).))).))))).)).((..((((((((((((.(((......))).)))))...)))))))...))...))... ( -34.00)
>DroYak_CAF1 7735 120 - 1
UGCGGGUGGCAAGUAACUUGUCACGGUAUCCGAGGGCAGUGCAGCCUUGGGAUCCUGUGACGGUGAUGGAUAUUUUGUGUUCAACGGUGGAAAGGAGUACGUAUCGCCUGGUGCAACAUA
.....((.(((........(((((((.((((.(((((......))))).)))).)))))))(((((((..((((((...((((....))))..))))))..)))))))...))).))... ( -45.10)
>DroMoj_CAF1 8190 120 - 1
UGCUGGCGGCAAAUAGCUGGUAACUGCAUCCGAUGGCUGCGCCGCCUUCGGAUCAUCCGAGGGCGAGGGAUAUUUGUUGUUCAGCGGUGGAAAGGAGUAGGUAUCCUUGCCGGACACGUA
((((((((((.....)))((((.((((.(((..(.(((((..(((((((((.....)))))))))..(((((.....))))).))))).)...))))))).))))...))))).)).... ( -49.80)
>consensus
UGCGGGUGGCAAGUAACUGGUCACAGUAUCCGAGGGCAAUGCAGCCUUGGGAUCCUGCGACGGCGAUGGAUAUUUUGUGUUCAACGGUGGAAAGGAGUACGUAUCCCCGGGGGAAACAUA
.(((((.........((((....))))((((.(((((......))))).)))))))))..((.((.(((((((...))))))).)).))...........((.(((.....))).))... (-20.94 = -21.33 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:18 2006