Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,393,637 – 4,393,735 |
Length | 98 |
Max. P | 0.688128 |
Location | 4,393,637 – 4,393,735 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.06 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -15.27 |
Energy contribution | -15.10 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.18 |
Mean z-score | -2.12 |
Structure conservation index | 0.48 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4393637 98 - 22407834 UAUAUGCU-------CCACCCUACUAGAUGUUCGAGGACGUGAACACGUCGC------CUUCAUUGGAGGGCGACAUGUCGAUUCCGGGCAAAAGAACCACAACU-GCAACG ....(((.-------.............((((((.(((((...(((.(((((------((((....))))))))).))))).)))))))))..............-)))... ( -28.69) >DroPse_CAF1 6520 102 - 1 UUUGUGAU---GAUUUCA------CAGAUGUUCGAAGAUGUAAACACGUCGCCGUCGCCCUCUUUGGAGGGUGACAUGUCCAUACCAGGCAAACGAACCACAACG-ACAACA (((((((.---....)))------)))).(((((..(((((....)))))((((((((((((....))))))))).((.......)))))...))))).......-...... ( -37.60) >DroSec_CAF1 4849 98 - 1 UAUGUGCU-------CCACCCCUCUAGAUGUUCGAGGACGUCAACACGUCGC------CUUCCUUGGAGGGCGACAUGUCGAUUCCAGGCAAAAGAACCACAACU-GCAACG ..((((..-------...........((((((....)))))).....(((((------((((....))))))))).((((.......)))).......))))...-...... ( -30.50) >DroSim_CAF1 4911 98 - 1 UAUGUGCU-------CCACCCCUCUAGAUGUUCGAGGACGUGAACACGUCGC------CUUCCUUGGAGGGCGACAUGUCGAUUCCAGGCAAAAGAACCACAACU-GCAACG ....(((.-------.....((((.........))))..(((.....(((((------((((....))))))))).((((.......)))).......)))....-)))... ( -31.00) >DroYak_CAF1 4901 100 - 1 UAUGUGUGCCU-----CCCCCAACUAGAUGUUCGAGGACGUCAACACGUCGC------CUUCCUUGGAGGGCGACAUGUCGAUUCCGGGCAAAAGAACCACAACU-GCAACG ..(((((((((-----...(.(((.....))).).(((.(((.(((.(((((------((((....))))))))).))).))))))))))).......))))...-...... ( -34.31) >DroMoj_CAF1 5660 93 - 1 ACUGUGUUCA---UUUCA------UAGAUGUUUGAGGACGUCAAUACAUCGC------CCUCUUUGGAGGGCGACAUGUCUAUACCGGGCAAACGCACGAC----AACAACA ..((((((..---.....------..((((((....))))))......((((------((((....))))))))..(((((.....)))))))))))....----....... ( -29.00) >consensus UAUGUGCU_______CCACCC__CUAGAUGUUCGAGGACGUCAACACGUCGC______CUUCCUUGGAGGGCGACAUGUCGAUUCCAGGCAAAAGAACCACAACU_GCAACG .............................((((..............(((((......((((....))))))))).((((.......))))...)))).............. (-15.27 = -15.10 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:14 2006