Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,382,708 – 4,382,801 |
Length | 93 |
Max. P | 0.682560 |
Location | 4,382,708 – 4,382,801 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 73.19 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -15.29 |
Energy contribution | -15.62 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.52 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4382708 93 - 22407834 AACAGUCGAUUACAGCG----------UUUGAUAUCGAUAAGCGCUCGAUAACAAUACGCUGAAAACAGGGUUGCCC-----------GUUGUUGAUAGCCCUGAAAAUUGUAA .(((((......(((((----------((((.((((((.......)))))).))).))))))....((((((((..(-----------(....)).))))))))...))))).. ( -29.80) >DroSec_CAF1 34463 97 - 1 GAUAGUCGAUUACAG-----------------UAUCGAUAACAGCUCGAUAACAAGAGUCUGGAAACAGGGUGGCUCCGGCAUAUCAGAUUGUCGAUAGCCCUGAACAUUGUAA ....((((((.....-----------------.))))))..((((((........))).)))....((((((.....(((((........)))))...)))))).......... ( -28.30) >DroSim_CAF1 30897 112 - 1 GAUAGUCGAUUACAGCGUAUCUGGUUGUUUGGUAUCGAUAACAGCUCGAUAACAAG--GCUGGAAACAGGGUGGCUCCUGCAUAUCAGAUUGUCGAUAGCCCUGAGCAUUGUAA .........((((((.((.((..((..((((.((((((.......)))))).))))--))..))..((((((.((....)).((((........)))))))))).)).)))))) ( -30.20) >consensus GAUAGUCGAUUACAGCG__________UUUG_UAUCGAUAACAGCUCGAUAACAAGA_GCUGGAAACAGGGUGGCUCC_GCAUAUCAGAUUGUCGAUAGCCCUGAACAUUGUAA .........((((((.................((((((.......))))))...............(((((((((................)))....))))))....)))))) (-15.29 = -15.62 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:13 2006