Locus 1633

Sequence ID 2L_DroMel_CAF1
Location 4,382,201 – 4,382,307
Length 106
Max. P 0.680786
window2621

overview

Window 1

Location 4,382,201 – 4,382,307
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.87
Mean single sequence MFE -33.18
Consensus MFE -22.80
Energy contribution -23.37
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -2.17
Structure conservation index 0.69
SVM decision value 0.31
SVM RNA-class probability 0.680786
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4382201 106 + 22407834
UAUGAUGAUCACGUCGUUAUUUGCGGGAUGAUCCUCAAGAAUUACCUCCUCAGCGAAGGAAUCCUGUAUGAGGAUCACGUCGUUAUUUGCGCGAUGAUUCUCAUGA--------------
(((((.(((((((.(((.....((((..(((((((((.........((((......))))........)))))))))..)))).....))))).))))).))))).-------------- ( -35.03)
>DroSec_CAF1 33893 117 + 1
UAUGAUGAUCACGUCGUUAUUUGCAGGAUGAUCCUCAAGAAUUACCUUCUCAGCGAUGGAAUCCUGUAUGAUGAUCACGUCGUUAUUUGCGGGAGGAU---CAAGAAUUACCUCCUCAUC
...((((((.((((.((((((((((((((..(((((.((((.....))))....)).))))))))))).)))))).)))).))))))((.((((((..---.........)))))))).. ( -33.20)
>DroSim_CAF1 30327 117 + 1
UAUGAUGAUCACGUCGUUAUUUGCAGGAUGAUCCUCAAGAAUUACCUCCUCAGCGAUGGAAUCGUGUAUGAUGAUCACAUCGUUAUUUCCGGGAGGAU---CAAGAAUUACCUCCUCAUC
.((((((((...)))))))).((.((((((((((((..((......))...(((((((..(((((.....)))))..)))))))........))))))---)).........)))))).. ( -31.30)
>consensus
UAUGAUGAUCACGUCGUUAUUUGCAGGAUGAUCCUCAAGAAUUACCUCCUCAGCGAUGGAAUCCUGUAUGAUGAUCACGUCGUUAUUUGCGGGAGGAU___CAAGAAUUACCUCCUCAUC
.((((((....))))))..((((.(((.....))))))).....((((((.(((((((..(((((.....)))))..)))))))......))))))........................ (-22.80 = -23.37 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:12 2006