Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,372,264 – 4,372,384 |
Length | 120 |
Max. P | 0.741830 |
Location | 4,372,264 – 4,372,384 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -35.82 |
Consensus MFE | -26.93 |
Energy contribution | -28.30 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.24 |
Mean z-score | -1.86 |
Structure conservation index | 0.75 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4372264 120 + 22407834 UUAACAAUAUGGUUCGAAGUUUGGCCCAGUGGACGAAGACGCUGAGCUUCCCCUCGCGUCUCUCGCCCAAUCGCAACUCCAAGGACUGCUCCACUCUGGCCAGUCCCGUACCGCCACCAA ..........(((.((....((((((.(((((((((((((((.(((......))))))))).))).......(((..((....)).)))))))))..))))))...)).)))........ ( -39.80) >DroVir_CAF1 45573 119 + 1 -AACCAAAAUGGUACGCAGCCUGGCACAGUGGACCAAAACGUUGAGUUUCCCCUCACGCCUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCCACACUGGCCAGCCCGGUGCCGCCGCCAA -.........(((((.(.(.(((((.((((((((.....(((.(((......))))))...)))........((((((.....))))))....)))))))))).).))))))........ ( -37.90) >DroGri_CAF1 34987 120 + 1 CAAUCAAAAUGGUACGCAGCUUGGCACAGUGGACCAAAACGUUGAGUUUUCCCUCACGUCUGUCCCCCAAUCGCAAUUCGAAAGAUUGCUCCACAUUGGCCAAUCCGGUGCCGCCACCAA ..........(((((.(.(.(((((.((((((((....((((.(((......)))))))..)))........(((((.(....))))))....)))))))))).).))))))........ ( -35.40) >DroWil_CAF1 2 111 + 1 ---------UGGUUCGCAGCCUAGCCCAGUGGACCAAAACGUUGAGUUUUCCCUCACGUUUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCCACUCUGGCCAGUCCAGUGCCUCCGCCGA ---------.(((..((((.((.(((.((((((...((((((.(((......)))))))))...........((((((.....))))))))))))..))).)).)...)))....))).. ( -31.40) >DroMoj_CAF1 40884 120 + 1 AAAUCAAAAUGGUACGCAGUCUAGCACAGUGGACCAAAACGUUAAGUUUUCCAUCACGUUUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCAACUCUGGCCAGCCCAGUGCCACCGCCAA .........((((((...(.((.((.(((.((((..((((((.............)))))))))........((((((.....))))))....).))))).)))...))))))....... ( -27.02) >DroAna_CAF1 28801 120 + 1 UAAACAAUAUGGUUCGCAGUCUGGCCCAGUGGACGAAGACGCUGAGCUUCCCCUCGCGUCUUUCGCCGAAUCGCAACUCCAAGGACUGCUCCACUUUGGCCAGUCCGGUGCCACCACCCA .........((((.(((.(.((((((.(((((((((((((((.(((......)))))))).)))).......(((..((....)).)))))))))..)))))).)..)))..)))).... ( -43.40) >consensus _AAACAAAAUGGUACGCAGCCUGGCACAGUGGACCAAAACGUUGAGUUUCCCCUCACGUCUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCCACUCUGGCCAGUCCGGUGCCGCCACCAA .........((((..(((.((((((..((((((...((((((.(((......)))))))))...........((((((.....))))))))))))...)))))...).))).)))).... (-26.93 = -28.30 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:09 2006