Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,364,634 – 4,364,738 |
Length | 104 |
Max. P | 0.564674 |
Location | 4,364,634 – 4,364,738 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 82.74 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -17.02 |
Energy contribution | -18.97 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.16 |
Mean z-score | -2.37 |
Structure conservation index | 0.58 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4364634 104 - 22407834 GUUUCA--GAUGAAAUCGAAUCAAAGCUG-----CAGCUCUGAAAUCGUCAUAUGAAAUGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGGUGCCUCA ((((((--.((((...(((.(((.(((..-----..))).)))..))))))).))))))((((.....((((((((..((((......))))..)))).)--))))))).... ( -29.90) >DroVir_CAF1 30652 105 - 1 ----CAAAAAUGAAAUCGAAUCAAUGCUGAAUGCCACCUCGCAU----GCAUGUGCAACGCAUUCAAGCGUUGUAAUUUGCAAUUUUAUGCGUUUUACACUCGUGCUCGCUGC ----.....(((((((((((((((((((((((((......((((----....))))...)))))).)))))))..)))))..)))))))(((...(((....)))..)))... ( -26.30) >DroSim_CAF1 11687 104 - 1 GUUUCA--GAUGAAAUCGAUUCAAAGCUA-----CAGCUCUGAAAUCGUCAUAUGAAAUGCAUUCGAGCGGGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGUUGCCUCA ((((((--.((((...(((((((.(((..-----..))).)).))))))))).))))))(((.....(((..((((..((((......))))..)))).)--))..))).... ( -30.20) >DroEre_CAF1 11791 104 - 1 GUUUCA--GAUGAAAUCGAAUCAAAGCUG-----CAGCUCUGAAAUCGUCAUAUGACGUGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGUUGCCUCA (((((.--...)))))(((((((.(((..-----..))).)))...((((....))))....))))((((((((((..((((......))))..)))).)--)))))...... ( -30.00) >DroYak_CAF1 12177 104 - 1 GUUUCA--GAUGAAAUCGAAUCAAAGCUG-----CAGCUCUGAAAUCAUCAUAUGAAACGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGUUGCCUCA ((((((--.((((.......(((.(((..-----..))).))).....)))).))))))(((.....(((((((((..((((......))))..)))).)--))))))).... ( -30.80) >DroAna_CAF1 21210 99 - 1 GCUUCA--AAUGAAAUCGAAUCAAAGCUG-----CAGCUUUGAAAACGUCAUAUGAAAUGCAGUGGAGCGCGGUAAUGUGCAAUUUUAUGCGUUUUACAC--GCAUUU----- ...(((--.((((.......(((((((..-----..))))))).....)))).)))(((((.((((((((((..(((.....)))...))))))))))..--))))).----- ( -29.20) >consensus GUUUCA__GAUGAAAUCGAAUCAAAGCUG_____CAGCUCUGAAAUCGUCAUAUGAAAUGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC__GCGUUGCCUCA ((((((...((((.......(((.(((((.....))))).))).....)))).)))))).......(((((.((((..((((......))))..))))....)))))...... (-17.02 = -18.97 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:08 2006