| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 482,859 – 482,965 |
| Length | 106 |
| Max. P | 0.940576 |
| Location | 482,859 – 482,965 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 91.73 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -21.94 |
| Energy contribution | -21.38 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.940576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 482859 106 + 22407834 AUGUAAACAUGUUUACAAACAAGAAGAUUUUCCCCAAUUGAACAGAUUAUGGG-GGUUCUUCGAAUUGGUGCAACUAGUUCGAUGGAAAGAUACUAAUCAAUGGAAU .((((((....)))))).....(((((...(((((((((.....)))..))))-)).)))))(((((((.....)))))))........(((....)))........ ( -25.20) >DroSec_CAF1 28673 107 + 1 AUGUAAGCAUGUUUACAAACAAGAAGAUUUUCCCCAAUUGAACAGAUUAUGGGGGGUUCUUCGAAUUGGUCCAACUAGUUCCGUGGAAACAUACUAACCAAUGGAAU .((((((....)))))).....(((((..((((((((((.....)))..))))))).)))))..((((((.....((((...(((....)))))))))))))..... ( -28.20) >DroSim_CAF1 28664 106 + 1 AUGUAAACAUGUUUACAAACAAGAAGAUUUUCCCCAAUUGAACAGAUUAUGGG-GGUUCUUCGAAUUAGUCCAACUAGUUCCGUGGAAACAUACUAACCAAUGGUAU .((((((....)))))).....(((((...(((((((((.....)))..))))-)).)))))(((((((.....))))))).(((....)))((((.....)))).. ( -28.50) >DroEre_CAF1 29284 107 + 1 AUGUAAACAUGUUUACGAACAAGAAGAUUUUCCACAAUUGAACAGAUUAUGGUGGGUUCUUCGAAUUGGUCAAACUAGUUUCGUGGAAACAUGCUAAUCAACGAAAU .((((((....)))))).....(((((...(((((...(((.....)))..))))).)))))(((((((.....)))))))((((....)))).............. ( -23.80) >consensus AUGUAAACAUGUUUACAAACAAGAAGAUUUUCCCCAAUUGAACAGAUUAUGGG_GGUUCUUCGAAUUGGUCCAACUAGUUCCGUGGAAACAUACUAACCAAUGGAAU .((((((....)))))).....(((((...(((((...(((.....)))..))))).)))))(((((((.....))))))).(((....)))............... (-21.94 = -21.38 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:46 2006