| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,361,690 – 4,361,803 |
| Length | 113 |
| Max. P | 0.722303 |
| Location | 4,361,690 – 4,361,803 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.34 |
| Mean single sequence MFE | -33.89 |
| Consensus MFE | -24.76 |
| Energy contribution | -24.40 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4361690 113 + 22407834 -------CUAAAUUUUGUGCUGUUUUCUCCCAGUGUACUUGUGGCUUCCUGCAGCUUGCGACGUGUGACGACAUGUAGAACUAAUUGUCGUCCACUCCGACGAGGGAAUCUCGUCGUGCA -------...........(((((.....(((((.....))).))......))))).(((((.(((.(((((((..((....))..))))))))))))(((((((.....))))))).))) ( -35.10) >DroSec_CAF1 12540 113 + 1 -------CUAAACUUUCCUCUUUUUUCUCCCAAUGCACUUGUGGCUUCCUGCAGCUUGCGACGUGUGACGACAUGUAGAACUAAUUGUCGUCCACUCCGCCAAGGGAACCUCGUCGUGCA -------..........................(((((.((.((.(((((.......(((..(((.(((((((..((....))..))))))))))..)))...))))))).))..))))) ( -32.00) >DroSim_CAF1 8762 113 + 1 -------CUAAACUUUCCUCUUUUUUCUCCCAAUGCACUUGUGGCUUCCUGCAGCUUGCGACGUGUGACGACAUGUAGAACUAAUUGUCGUCCACUCCGGCAAGGGAACCUCGUCGUGCU -------...........................((((.((.((.(((((...(((.(.((.(((.(((((((..((....))..))))))))))))))))..))))))).))..)))). ( -32.10) >DroEre_CAF1 8765 107 + 1 -------------UCCCUCCUCUUUUUGUCCAGUGCACUUGUGGCUUCCUGCAGCUUGCGACGUGUGACGACAUGUAGAACUAAUUGUCGUCCACUGCGGCAAGGGAACCUCGGCGUGCA -------------....................((((((((.((.(((((...(((.(((..(((.(((((((..((....))..))))))))))))))))..))))))).))).))))) ( -35.30) >DroYak_CAF1 9132 120 + 1 UUGUGUACUGAACUCCCUCCUAUUUUCUCCCAGUGCUUUUGUGGCUUCCUGCAGCUUGCGACGUGUGACGACAUGUAGAACUAAUUGUCGUCCACUGCGGCAAGGGAGCCUCGGCGUGCA .(((((((((....................))))))..(((.((((((((...(((.(((..(((.(((((((..((....))..)))))))))))))))).)))))))).)))...))) ( -39.35) >DroAna_CAF1 18160 95 + 1 ---------------------AUUUU----CCGUGUACCUAUGGCUUCCUGCAGCUUACGACGUGUGACGACAUGUAGAACUAAUUGUCGUCCACUCUCCGAAGGUGACUUCGACGUGGC ---------------------.....----(((((....))))).........(((.(((..(((.(((((((..((....))..))))))))))....(((((....))))).)))))) ( -29.50) >consensus _______CUAAACUUUCUCCUAUUUUCUCCCAGUGCACUUGUGGCUUCCUGCAGCUUGCGACGUGUGACGACAUGUAGAACUAAUUGUCGUCCACUCCGGCAAGGGAACCUCGUCGUGCA ..................................((((....((.((((.....((((((..(((.(((((((..((....))..))))))))))..)).)))))))))).....)))). (-24.76 = -24.40 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:07 2006