Locus 1628

Sequence ID	2L_DroMel_CAF1
Location	4,359,447 – 4,359,541
Length	94
Max. P	0.633106

overview

Window 5

Location	4,359,447 – 4,359,541
Length	94
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	91.38
Mean single sequence MFE	-31.06
Consensus MFE	-26.46
Energy contribution	-27.90
Covariance contribution	1.44
Combinations/Pair	1.03
Mean z-score	-1.31
Structure conservation index	0.85
SVM decision value	0.20
SVM RNA-class probability	0.633106
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4359447 94 + 22407834
CAUGGAUCAGUUGGGGCGGGCAGCUCGCAGCUCCACAACUCCAAAGCGAUAGCAUGUUCCUCUGUUUUUGUUGCCGCGCGCUGUUUGUUCUGCC
............((((((((((((.(((.((...((((...((.((.((........)))).))...)))).)).))).))))))))))))... ( -28.00)
>DroSec_CAF1 10218 94 + 1
CAUGGAUCAGUUGGGGCGGGCAGCUCGCAGCUCCACAACUCCAAAGCGAUAGCAUGUUCCUCUGUUUUUGUUGCUGCGCGCUGUUUGUUCUGCC
............((((((((((((.((((((...((((...((.((.((........)))).))...)))).)))))).))))))))))))... ( -32.60)
>DroSim_CAF1 6443 94 + 1
CAUGGAUCAGUUGGGGCGGGCAGCUCGCAGCUCCACAACUCCAAAGCGAUAGCAUGUUCCUCUGUUUUUGUUGCUGCGCGCUGUUUGUUCUGCC
............((((((((((((.((((((...((((...((.((.((........)))).))...)))).)))))).))))))))))))... ( -32.60)
>DroEre_CAF1 6424 84 + 1
CAUGGAUCAGUUGGGGCGAGCAGCUCGCAGCUCCAGAACUCCACAAC----------UCCUCUGUUUUUGUUGCUGCCCGCUGUUUGUUCUGGC
.........((..(((((((((((..(((((..(((((....(((..----------.....))))))))..)))))..)))))))))))..)) ( -32.70)
>DroYak_CAF1 6638 94 + 1
CAUGGAUCAGUUGGGGCGGCCAGCUUGCAGCUCCACAACUCCAAAGCGAUAGCAUGUUCCUCUGUUUUUGUUGCUGCUCGCUGUUUGUUCUGGC
.........((..(((((..((((..(((((...((((...((.((.((........)))).))...)))).)))))..))))..)))))..)) ( -29.40)
>consensus
CAUGGAUCAGUUGGGGCGGGCAGCUCGCAGCUCCACAACUCCAAAGCGAUAGCAUGUUCCUCUGUUUUUGUUGCUGCGCGCUGUUUGUUCUGCC
.........(..((((((((((((.((((((...((((...((.((.((........)))).))...)))).)))))).))))))))))))..) (-26.46 = -27.90 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:06 2006