Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,357,490 – 4,357,582 |
Length | 92 |
Max. P | 0.559237 |
Location | 4,357,490 – 4,357,582 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 81.54 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -21.73 |
Energy contribution | -23.20 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.12 |
Mean z-score | -1.35 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4357490 92 + 22407834 CCCAUGGGAUUUCCCUGGGAGUCCGUUA-GCUGGCCUUGUGUUUCCUCUGGAUGAUUAAAGUAUCUA--AAGA------GAAAGGGCGUGGGAGCCACUCU ((((.(((....)))))))........(-(.((((((..(((((.((((....(((......)))..--.)))------)...)))))..)).)))))).. ( -29.80) >DroSec_CAF1 8264 92 + 1 CCCAGGGGAUUUCCCUGGGAGUCCGUUA-GCUGGCCUUGUGUUUCCUCUGGAUGAUUAAAAUAUCUA--AAGC------GAAAGGGCGUGGGAGCCACUAU (((((((.....))))))).......((-(.((((((..((((((((.((((((.......))))))--.)).------)))...)))..)).))))))). ( -33.50) >DroSim_CAF1 4489 93 + 1 CCCAGGGGAUUUCCCUGGGAGUCCGUUAGGCUGGCCUUGUGUUUCCUCUGUAUGAUUAUAAUAUCUA--AAGC------GAAAGGGCGUGGGAGCCACUCU (((((((.....)))))))((.((....))))(((((..(((((..((.((..(((......)))..--..))------))..)))))..)).)))..... ( -30.90) >DroEre_CAF1 4476 92 + 1 CCCAGGGGAUUUCCCUGGGAGUCCGUUA-GUUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUA--AGCA------GUAAGGGCGUGGGAGCCACUUC (((((((.....)))))))........(-((.(((((..(((((...(((...(((......)))..--..))------)...)))))..)).)))))).. ( -33.80) >DroYak_CAF1 4656 98 + 1 CCCAGGGGCUUUCCCUGGGAGUUCGUUA-UAUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUA--GGCAGAAACAGAAAGGGCGUGGGAGCCACUCU (((((((.....))))))).........-..((((((..(((((..((((..((.(((.......))--).))....))))..)))))..)).)))).... ( -35.10) >DroAna_CAF1 13582 92 + 1 CCGCGGGGAGUUACC-GAACGACCGUUA-GUUGGCCUUGUGCUUCCUCUGGAAAAGUCUUUAAUCUAAAAAGC------GACAAAGCGUGGGAGCG-UUUU (((.(((((((....-(..((((.....-))))..)....))))))).)))....((((((........))).------)))(((((((....)))-)))) ( -21.70) >consensus CCCAGGGGAUUUCCCUGGGAGUCCGUUA_GCUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUA__AAGA______GAAAGGGCGUGGGAGCCACUCU (((((((.....)))))))............((((((..(((((..((((((((.......))))))............))..)))))..)).)))).... (-21.73 = -23.20 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006