| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,352,522 – 4,352,642 |
| Length | 120 |
| Max. P | 0.581930 |
| Location | 4,352,522 – 4,352,642 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.30 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -21.26 |
| Energy contribution | -20.82 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4352522 120 + 22407834 CAAGCUCUUAAGAAUGUUUCCCAUUCACUUGAAAAAAAAGCUGAAUGAUCUCGGAAUAACUGGAGGCAAAUAUCUCAAAGUGCAGUGCUCUCUCAAUAACCACUGACAGAGUUCCCAUCA ...((.(((.(((.((((((((((((((((.......))).)))))).....(......).)))))))....)))..))).)).(.(((((.(((........))).))))).)...... ( -24.50) >DroSim_CAF1 22012 118 + 1 CAAGCUCUUAAGAAUGUUUCCCAUUCACUUGAAA--AAAGCUGAAUGAUCUCGGAAUAACCGGAGGCAAAUAUCCCAAAGUGCAGUGCUCCCUCAAUAACUGCUGACAGAGUUCCCAUCA ..((((((......((((((((((((((((....--.))).)))))).....((.....))))))))).............(((((............)))))....))))))....... ( -27.10) >DroEre_CAF1 26655 117 + 1 CAGCCUCUCAAGAGUGCUUCCCAUUCACUUGAA---AAAGCUGAAUGAUCUCGGAAUAACUGGAGGCAAAUAUCUCAAAGUGCAGUGCUCCCUCAAUAACCGCUGACAGAGUUCCCAUCA ..((((((....(((..(((((((((((((...---.))).)))))).....))))..)))))))))............(((....((((..(((........)))..))))...))).. ( -27.90) >DroYak_CAF1 22816 117 + 1 CAAGCACUCAAGAGUGCCGUCCAUUCACUUGAA---AAAGCUGAAUGAUCUCGAAAUAACUGGAGGCAAAUAUCUCAAAGUGCAGUGCUCUCUCAAUAGCCGCUGACAGAGUUCCCAUCA ...(((((..(((.((((...(((((((((...---.))).)))))).(((.(......).)))))))....)))...))))).(.(((((.(((........))).))))).)...... ( -31.20) >consensus CAAGCUCUCAAGAAUGCUUCCCAUUCACUUGAA___AAAGCUGAAUGAUCUCGGAAUAACUGGAGGCAAAUAUCUCAAAGUGCAGUGCUCCCUCAAUAACCGCUGACAGAGUUCCCAUCA ..((((((......((((((((((((((((.......))).)))))).....(......).)))))))...........((.(((((.............)))))))))))))....... (-21.26 = -20.82 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:04 2006