Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,352,253 – 4,352,373 |
Length | 120 |
Max. P | 0.531755 |
Location | 4,352,253 – 4,352,373 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -23.65 |
Energy contribution | -23.77 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.40 |
Structure conservation index | 0.91 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4352253 120 - 22407834 UCAAAACUAUUCCAAUAAAACCCUUUUCAUUCCGCCGAAUGGUUUCAGUUUCCUUUCCGUUUGAGCAUGAACUUUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUCGA ..............................((((.(((..(((((.(((((.(((.......)))...)))))..)))))..)))..)))).....(((((((....)))))))...... ( -22.90) >DroSim_CAF1 21743 120 - 1 UCAAAACUAUACAAAUAAAACCCUUUUCAUUCCGCCGAAUGGUUUCAGUUUCCUUUCUGUUUGAGUCUGAACUUUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA ..............................((((.(((..(((((.(((((...(((.....)))...)))))..)))))..)))..)))).(((((((((((....)))))))..)))) ( -27.80) >DroEre_CAF1 26391 120 - 1 UCAAAACUAUACCAAUAAAACCCUUUUCAUUCUGCCGAAUGGAUUCAGUUUCCUUUCUGUUUGAGGCUGAACUCUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA (((......................(((((((....)))))))(((((((((..........)))))))))...)))..(((.....)))..(((((((((((....)))))))..)))) ( -28.10) >DroYak_CAF1 22536 120 - 1 UCAAAACUAAGCCAAUAAAACCCUUUUCAUUCCGUCGAAUGGUUUCAGUUUCCUUUCUGUUUGAGUCUGAACUUUGAACCCGUCAACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA ..............................((((....((((.(((((.(((..(((.....)))...)))..))))).))))....)))).(((((((((((....)))))))..)))) ( -25.40) >consensus UCAAAACUAUACCAAUAAAACCCUUUUCAUUCCGCCGAAUGGUUUCAGUUUCCUUUCUGUUUGAGUCUGAACUUUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA ..............................((((.(((.(((.(((((.(((..(((.....)))...)))..))))).))))))..)))).(((((((((((....)))))))..)))) (-23.65 = -23.77 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:02 2006