Locus 1624

Sequence ID 2L_DroMel_CAF1
Location 4,352,053 – 4,352,173
Length 120
Max. P 0.871733
window2611

overview

Window 1

Location 4,352,053 – 4,352,173
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.93
Mean single sequence MFE -47.22
Consensus MFE -37.85
Energy contribution -38.60
Covariance contribution 0.75
Combinations/Pair 1.09
Mean z-score -2.10
Structure conservation index 0.80
SVM decision value 0.87
SVM RNA-class probability 0.871733
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4352053 120 - 22407834
CGCAGCUGCCGCUUUGCGUCGCGCAUGCGCAGACACAGAAUUCGAGGGAUUUGCCAUGGCAACUCCCAGUUGGCCCAAACACACACACACAGAAAAUGCUGGCAAGGGGUUGCGGUGGCU
...(((..((((((((.((((((....))).))).))))......((((.((((....)))).))))....(((((.............(((......))).....)))))))))..))) ( -44.67)
>DroSim_CAF1 21547 116 - 1
CGCAGCUGCUGCUUUGCGUCGCGCAUGCGCAGACACAGAAUUCGAGGGAUUUGCCAUGGCAACUCCCAGUUGGCCCAAACAC----ACACAGAACAUGGUGGGAAGGGGUUGCGGUGGCU
...(((..((((((((.((((((....))).))).))))......((((.((((....)))).))))....(((((.....(----((.((.....))))).....)))))))))..))) ( -47.40)
>DroEre_CAF1 26197 114 - 1
CGCAGCUGCCGCUUUUCGUCGCGCAUGCGCAGACACAGAAUUCGAGGGAUUUGCCAUGGCAACUCCCAGUUGGCCCAAACAC------ACAGAAAACGGCGGCAAGGGGUAGCGCUGGCU
.((.((((((.(((.((((((((....)))..........(((..((((.((((....)))).)))).(((......)))..------...)))...))))).))).))))))....)). ( -44.10)
>DroYak_CAF1 22342 114 - 1
UGCAGCUGCCCCUUUCCGUCGCGCAUGCGCAGACACAGAAUUCGAGGGAUUUGCCAUGGCAACUCCCAGUUGGCCCAAACAC------ACGGAAAACGGCGGCAAGGGGUAGCGGAGGCU
.((.((((((((((.((((((((....)))..........((((.((((.((((....)))).)))).(((......)))..------.))))....))))).))))))))))....)). ( -52.70)
>consensus
CGCAGCUGCCGCUUUGCGUCGCGCAUGCGCAGACACAGAAUUCGAGGGAUUUGCCAUGGCAACUCCCAGUUGGCCCAAACAC______ACAGAAAACGGCGGCAAGGGGUAGCGGUGGCU
.((.((((((.(((.((((((((....)))..........(((..((((.((((....)))).)))).(((......)))...........)))...))))).))).))))))....)). (-37.85 = -38.60 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:01 2006