Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,351,696 – 4,351,816 |
Length | 120 |
Max. P | 0.751340 |
Location | 4,351,696 – 4,351,816 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.37 |
Mean single sequence MFE | -39.55 |
Consensus MFE | -33.30 |
Energy contribution | -33.80 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -1.72 |
Structure conservation index | 0.84 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4351696 120 + 22407834 GCUUGCGUGAUUAAUUGCCAUGUUUGCGGCUGUUAUUGUGAGUCCCUGCUGUGUUUGCCAUUUGUCUGGUUGUUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGGGACAAGGCCAGUC ((..(((((.........)))))..))((((....((.((((.....(((((((((((((..((((..........)))).))))).....))))))))...)))).))...)))).... ( -38.10) >DroSim_CAF1 21199 116 + 1 GCUUGCGUGAUUAAUUGCCAUGUUUGCGGCUGUUAUUGUGAGUC-CUGCUG---UUGCCAUUUGUCUGGUUGGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGGCGCAAGGCCAGUC .(((((((...((((.(((........))).))))..((..(((-((....---((((((..((((..........)))).))))))..)))))...)).......)))))))....... ( -36.20) >DroEre_CAF1 25857 116 + 1 GCUUGCGUGAUUAAUUGCCAUGUUUGUGGCUAUUAUUCUGAGUC-CUGCUG---UUGCCAUUUGUCUGGUUUGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUGCCGGGGCAAGGCCAGUC ...(((..((.((((.(((((....))))).)))).))...(((-((....---((((((..((((..........)))).))))))..))))))))(((((((....)))))))..... ( -42.00) >DroYak_CAF1 21990 116 + 1 GCUUGCGUGAUUAAUUGCCAUGUUUGUGGCUAUUAUUGCGAGUC-CUGCUG---UUGCCAUUUGUCUGCUUUGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGCGGCAAGGCCAAUC .(((((.....((((.(((((....))))).)))).((((((..-..((((---(..((.((((((((((......))))..))))))..))..)))))...)))))))))))....... ( -41.90) >consensus GCUUGCGUGAUUAAUUGCCAUGUUUGCGGCUAUUAUUGUGAGUC_CUGCUG___UUGCCAUUUGUCUGGUUGGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGGGGCAAGGCCAGUC ((..(((((.........)))))..))((((....(((((((...((((.....((((((..((((..........)))).)))))).......))))....)))))))...)))).... (-33.30 = -33.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:00 2006