Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,351,161 – 4,351,273 |
Length | 112 |
Max. P | 0.772296 |
Location | 4,351,161 – 4,351,273 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -36.20 |
Consensus MFE | -31.65 |
Energy contribution | -31.15 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -1.66 |
Structure conservation index | 0.87 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4351161 112 + 22407834 GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG----CCAAAGACCGAAGAUCAAGGCUCCCAGCAGUGGCGUGUCAAAUGGCCA----ACCAGCUGUUGCCAUCCCAGUAAAUCAAAACC (((((((....))))).)).(((((..(((((----(((..(((((....(((..((.....))..))))).)))...))))))----...))..))))).................... ( -35.70) >DroSim_CAF1 20639 112 + 1 GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG----CCAAAGACCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCA----ACCAGCUGUUGCCAUCCCACUAAAUCAAAACC (((((((....))))).)).(((((..(((((----(((......(.....)..((((((((....))))).)))...))))))----...))..))))).................... ( -36.50) >DroEre_CAF1 25237 119 + 1 AGGCAGCUGCAGCUGCACCAGCAACUCCUUGGAACGCCGAAGACCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCAAUC-ACCAGCUGUUGCCAUCCUACUAAAUCAAAACC .((((((.((.((((...)))).......(((.(((((.......(.....)...((((....)))))))))(((....))).....-.))))).))))))................... ( -33.30) >DroYak_CAF1 21375 116 + 1 GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG----CCAAAGGGCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCUACCAACCAGCUGUUGCCAUCCCACUAAAUCAAAACC .(((((((...((((...)))).....(((.(----((....))).))).....)))))))...(((((.(((.(((.(((........)))....))).))).)))))........... ( -39.30) >consensus GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG____CCAAAGACCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCA____ACCAGCUGUUGCCAUCCCACUAAAUCAAAACC (((..(((((((((((....))...((.((((....)))).))...........))))).)))).((((((...((..(((........)))..)).))))))))).............. (-31.65 = -31.15 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:59 2006