Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,348,284 – 4,348,402 |
Length | 118 |
Max. P | 0.591877 |
Location | 4,348,284 – 4,348,402 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.30 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -23.26 |
Energy contribution | -24.20 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -1.57 |
Structure conservation index | 0.82 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4348284 118 - 22407834 AAACCAGAAUUCUCCUAAGGCGGCUCCACAGCUUUUGAUGAUCUCGCU--CUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGGUGCUUAAAACAAGUGCCAAUUU ...(((((..((((..(((((.........))))).)).))..))((.--..((((...(((((((((......))))))))).))))...)))))((..(((.....)))..))..... ( -27.50) >DroSim_CAF1 17766 118 - 1 AAACCAGAAUUCUUCUGGGGCGGCUCCACAGCUUUUGAUGAUCUUGCU--CUCUACUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGGUGCUUAAAACAAGUGCCAAUUU ...(((((.....)))))((((((.((.((((....((.((......)--)))...((.(((((((((......))))))))).)).....)))).)).)))..........)))..... ( -28.20) >DroEre_CAF1 22241 118 - 1 GAACCAGAAUUUCUCUGAGGCGGCUCCACUGCUUUUGAUGAUCUCGCU--CUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGCUGCUUGAAACAAGUGCCAAUUU ......((..((.((.(((((((.....))))))).)).))..))((.--..((((...(((((((((......))))))))).))))...))..(((.(((((...))))))))..... ( -28.30) >DroYak_CAF1 17760 120 - 1 GAACCAGAAUUUCGCUGAGGCGGCUCCACUGCUUUUGAUGAUCUCGCUCUCUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUUGCUGGGGUGCUUGAAAGAAGUGCCAAUUU ...(((((...((((.(((((((.....))))))).).)))..))((.....((((...(((((((((......))))))))).))))...)))))((..(((.....)))..))..... ( -29.80) >consensus AAACCAGAAUUCCUCUGAGGCGGCUCCACAGCUUUUGAUGAUCUCGCU__CUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGGUGCUUAAAACAAGUGCCAAUUU ...(((((..((.((.(((((((.....))))))).)).))..))((.....((((...(((((((((......))))))))).))))...)))))(((((((.....)))))))..... (-23.26 = -24.20 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:53 2006