Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,347,703 – 4,347,794 |
Length | 91 |
Max. P | 0.738165 |
Location | 4,347,703 – 4,347,794 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.47 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -16.41 |
Energy contribution | -15.65 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.28 |
Mean z-score | -1.68 |
Structure conservation index | 0.82 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4347703 91 - 22407834 UAGUUACAACAUACAUAUUAUUUGUAGCAU------AUACCCUGUACUUAAAAUGUGGAUCCCUGUAUUCCCUGGGCACGUGUAGA---CUCACUCAUCA ..(((((((.(((.....))))))))))..------.......((.((....(((((...(((..........))))))))..)))---).......... ( -13.10) >DroSec_CAF1 16399 96 - 1 UAGUUGCACUACUCAAAUUAUUUGUAGCAUACAAGUAUACCCUGCAUUUAAAAUGGGGAUCCCUGUAUCCCCUUGGCACGUGCAGU---CUCACUCA-CU .((((((((...((((.(((..(((((.(((....)))...)))))..)))...((((((......))))))))))...)))))).---))......-.. ( -22.60) >DroSim_CAF1 17174 94 - 1 UAGUUACACUACACAAAUUACUUGUAGCAU------AUACCCUGCAUUUAAAAUGGGGAUCCCUGUAUCCCCUUGGCACGUGUAGUAGACUCACUCAGCA .((((..(((((((...(((..(((((...------.....)))))..)))...((((((......)))))).......))))))).))))......... ( -24.60) >consensus UAGUUACACUACACAAAUUAUUUGUAGCAU______AUACCCUGCAUUUAAAAUGGGGAUCCCUGUAUCCCCUUGGCACGUGUAGU___CUCACUCA_CA ..((((((..............)))))).............((((((.......((((((......)))))).......))))))............... (-16.41 = -15.65 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:52 2006