Locus 1616

Sequence ID 2L_DroMel_CAF1
Location 4,344,714 – 4,344,805
Length 91
Max. P 0.968015
window2594

overview

Window 4

Location 4,344,714 – 4,344,805
Length 91
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 88.04
Mean single sequence MFE -20.86
Consensus MFE -20.68
Energy contribution -20.52
Covariance contribution -0.16
Combinations/Pair 1.11
Mean z-score -1.62
Structure conservation index 0.99
SVM decision value 1.62
SVM RNA-class probability 0.968015
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4344714 91 - 22407834
AAAUUCCAUUUUU----------UUUUGUGGUAUGCAGAACAGCUACUGUACGGGUGUAUA------UAUAUCCAUGGGUAUAUAUUUAGAAUCGUCUUCCAGAUAC
....(((((....----------...((..(((.((......)))))..)).((((((...------.)))))))))))....(((((.(((.....))).))))). ( -16.20)
>DroSec_CAF1 13452 89 - 1
AAAUUCCAUUAU------------UUUGUGGUAUGCAGAACAGCUACUGUACGGGUUUAUA------UAUAUCCAUGGAUAUAUAUUUAGAAUCGUUUUCUAGAUAC
....(((((...------------..((..(((.((......)))))..)).((((.....------...)))))))))....(((((((((.....))))))))). ( -20.30)
>DroSim_CAF1 14213 89 - 1
AAAUUCCAUUUU------------UUUGUGGUAUGCAGAACAGCUACUGUACGGGUGUAUA------UAUAUCCAUGGGUAUAUAUUUAGAAUCGUCUUCUGGAUGC
.....((((...------------...))))(((.((((((((...))))((((....(((------((((((....)))))))))......))))..)))).))). ( -20.10)
>DroEre_CAF1 13677 101 - 1
AAAUUCCAUUUUGUUUUCUUUUGUUUUGUGGUAUGCAGAACAGCUACUGUACGGGUGUAUA------UAUAUCCAUGGGUAUAUAUUUAGAAUCGUCUUCUAGAUAC
....(((((...........(((((((((.....))))))))).........((((((...------.)))))))))))....(((((((((.....))))))))). ( -22.70)
>DroYak_CAF1 14004 99 - 1
UAAUUCCAUUUUGU--------AUUUUGUGGUAUGCAGAACAGCUACUGUACGGGUGUAUAUAUAUAUAUAUCCAUGGGUAUAUAUUUAGAAUCGUCUUCUGGAUAC
....(((((...((--------((...(((((.((.....))))))).))))(((((((((....))))))))))))))....(((((((((.....))))))))). ( -25.00)
>consensus
AAAUUCCAUUUU___________UUUUGUGGUAUGCAGAACAGCUACUGUACGGGUGUAUA______UAUAUCCAUGGGUAUAUAUUUAGAAUCGUCUUCUAGAUAC
....(((((.................((..(((.((......)))))..)).(((((((........))))))))))))....(((((((((.....))))))))). (-20.68 = -20.52 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:45 2006