Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,342,219 – 4,342,338 |
Length | 119 |
Max. P | 0.999933 |
Location | 4,342,219 – 4,342,338 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.54 |
Mean single sequence MFE | -28.33 |
Consensus MFE | -20.37 |
Energy contribution | -21.70 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.42 |
Structure conservation index | 0.72 |
SVM decision value | 4.64 |
SVM RNA-class probability | 0.999933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4342219 119 + 22407834 AGUUUGAUAUAUAGGCACAGAUAAAUGAAGAUAAGGAGAUCAAGUUCCUUUAAGCCAGAUGAUUGUCUUAAAGAAAGAUGGUAUUUCAUUUAGUGGUGCCUAAAUCAAA-UGACUUUAAG .(((((((...(((((((...(((((((((..((((((......))))))...........((..((((.....))))..)).)))))))))...))))))).))))))-)......... ( -34.10) >DroSec_CAF1 11109 94 + 1 AGUUUGAUA--UAGGCACACA------------------------UCCCUUAAGCCAGAUGCUUGUCUUAAAGAAAGAUUAUAAAUCAUGUAGUAGUGCCUCAAUCAAAUUGACUUUAAA ((((((((.--.((((((((.------------------------......((((.....))))(((((.....))))).............)).))))))..))))))))......... ( -20.90) >DroSim_CAF1 11731 118 + 1 AGUUUGAUG--UAGGCACACAUAAAUGAAGAUGAGAAGAUCAAGGUCCUUUAAGCCAGAUGAUUGUCUUAAAGAAAGAUUAAAUAUCAUGUAGUAGUGCCUAAAUCAAAUUGACUUUAAU ((((((((.--(((((((((...........(((((.(((((.(((.......)))...))))).)))))......(((.....))).....)).))))))).))))))))......... ( -30.00) >consensus AGUUUGAUA__UAGGCACACAUAAAUGAAGAU_AG_AGAUCAAG_UCCUUUAAGCCAGAUGAUUGUCUUAAAGAAAGAUUAUAUAUCAUGUAGUAGUGCCUAAAUCAAAUUGACUUUAAA ((((((((...(((((((.............................(((((((.(((....))).)))))))...(((.....)))........))))))).))))))))......... (-20.37 = -21.70 + 1.33)
Location | 4,342,219 – 4,342,338 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.54 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -21.19 |
Energy contribution | -21.63 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -4.21 |
Structure conservation index | 0.79 |
SVM decision value | 4.61 |
SVM RNA-class probability | 0.999928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4342219 119 - 22407834 CUUAAAGUCA-UUUGAUUUAGGCACCACUAAAUGAAAUACCAUCUUUCUUUAAGACAAUCAUCUGGCUUAAAGGAACUUGAUCUCCUUAUCUUCAUUUAUCUGUGCCUAUAUAUCAAACU ..........-((((((.(((((((...((((((((........((((((((((.((......)).))))))))))...(((......)))))))))))...)))))))...)))))).. ( -30.20) >DroSec_CAF1 11109 94 - 1 UUUAAAGUCAAUUUGAUUGAGGCACUACUACAUGAUUUAUAAUCUUUCUUUAAGACAAGCAUCUGGCUUAAGGGA------------------------UGUGUGCCUA--UAUCAAACU ...........((((((..((((((.((.....(((.....))).(((((((((.((......)).)))))))))------------------------.)))))))).--.)))))).. ( -22.40) >DroSim_CAF1 11731 118 - 1 AUUAAAGUCAAUUUGAUUUAGGCACUACUACAUGAUAUUUAAUCUUUCUUUAAGACAAUCAUCUGGCUUAAAGGACCUUGAUCUUCUCAUCUUCAUUUAUGUGUGCCUA--CAUCAAACU ...........((((((.(((((((.((((.((((..........(((((((((.((......)).)))))))))...(((.....)))...)))).)).)))))))))--.)))))).. ( -27.60) >consensus AUUAAAGUCAAUUUGAUUUAGGCACUACUACAUGAUAUAUAAUCUUUCUUUAAGACAAUCAUCUGGCUUAAAGGA_CUUGAUCU_CU_AUCUUCAUUUAUGUGUGCCUA__UAUCAAACU ...........((((((.(((((((........(((.....))).(((((((((.((......)).)))))))))...........................)))))))...)))))).. (-21.19 = -21.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:43 2006