Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,339,213 – 4,339,311 |
Length | 98 |
Max. P | 0.500000 |
Location | 4,339,213 – 4,339,311 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 88.96 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -17.71 |
Energy contribution | -18.15 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.34 |
Structure conservation index | 0.82 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4339213 98 + 22407834 CCCACAUCCAUUUCCCGC-----------------CCACAUAUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUUUUCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU ...........(((((((-----------------........((((((((..........(((...)))..(((.........))))))))))).)))))))............ ( -22.30) >DroSec_CAF1 8128 97 + 1 CCCACAUCCAUUUCCCGC-----------------CCACAUAUCCGUUUGCAUAUUUGAUUGGCUUUGCCGCGUU-UCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU ...........(((((((-----------------........((((((((..........(((...)))..(((-........))))))))))).)))))))............ ( -23.10) >DroSim_CAF1 8746 97 + 1 CCCACAUCCAUUUCCCGC-----------------CCACAUAUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU-UCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU ...........(((((((-----------------........((((((((..........(((...)))..(((-........))))))))))).)))))))............ ( -23.10) >DroEre_CAF1 8196 113 + 1 -CCACAUCCAUUUCCCGCCACCCGCCAUCCGCCCCCCACACUUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU-UCCCUAAUAACGUAAAUGGUCCGGGCAUUAAAGCCACAU -.............................((((.........((((((((..........(((...)))..(((-........)))))))))))...))))............. ( -18.80) >DroYak_CAF1 8434 97 + 1 CCCACAACCAUUUCCCGC-----------------CCACAUGUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU-UCCCUAAUAGCGUAAAUGGUCCGGGAAUUAAAGCCACAU ...........((((((.-----------------......(.((((((((..........(((...)))((...-.........)))))))))).)))))))............ ( -21.11) >consensus CCCACAUCCAUUUCCCGC_________________CCACAUAUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU_UCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU ...........(((((((.........................((((((((..........(((...)))..(((.........))))))))))).)))))))............ (-17.71 = -18.15 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:41 2006