Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,338,797 – 4,338,887 |
Length | 90 |
Max. P | 0.549198 |
Location | 4,338,797 – 4,338,887 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 83.05 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -16.44 |
Energy contribution | -16.25 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -1.87 |
Structure conservation index | 0.60 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4338797 90 - 22407834 AUAG-----AGGAAAUCACACGUAAAAAGCCA---GCACGUGGUGGAGCACGG-----GCAGUUUUGCAGCUCAAU--AGAGUGUGGCGAAUGGCCGUUGAAGCA ....-----...................((((---((.((((......))))(-----((...(((((.((((...--.))))...)))))..)))))))..)). ( -25.50) >DroSec_CAF1 7714 89 - 1 AAAG-----AGGAAAUCACACGUAAAAUGCCA---GCACGUGGUGGAGCACGG-----GCCGU-UUGCAGCUCAAU--AGAGGGCGGCGAAUGGCUGUUGAAGCA ....-----..................(((((---((.((((......))))(-----(((((-((((.((((...--...)))).))))))))))))))..))) ( -31.20) >DroSim_CAF1 8329 92 - 1 AAAG-----AGGAAAUCACACGUAAAAAGCCAGCAGCACGUGGUGGAGCACGG-----GCAGU-UUGCAGCUCAAU--AGAGGGCGGCGAAUGGCUGUUGAAUCA ....-----.....................(((((((.((((......)))).-----...((-((((.((((...--...)))).)))))).)))))))..... ( -27.40) >DroEre_CAF1 7774 102 - 1 AAAAAGGAAGAGAAAUCACACGUAAAAAGUCA---GCACGUGGUGGAGCACGGCAACUGCAAACUGGCAGCUCAAUAAAGAGGGUGGCGAAUGGCUGCUGAAGCG .........((....))............(((---(((.((.((...((.((.(..((((......))))(((......)))).))))..)).)))))))).... ( -25.20) >consensus AAAG_____AGGAAAUCACACGUAAAAAGCCA___GCACGUGGUGGAGCACGG_____GCAGU_UUGCAGCUCAAU__AGAGGGCGGCGAAUGGCUGUUGAAGCA ............................((((...((.((((......))))......((......)).((((........)))).))...)))).......... (-16.44 = -16.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:40 2006