Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 473,777 – 473,874 |
Length | 97 |
Max. P | 0.912312 |
Location | 473,777 – 473,874 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 79.13 |
Mean single sequence MFE | -42.32 |
Consensus MFE | -27.55 |
Energy contribution | -28.50 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.41 |
Mean z-score | -2.08 |
Structure conservation index | 0.65 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 473777 97 + 22407834 UAAUCCCGGGCAGCAAAUGGGCGUGGGCGUUGGCAUGCCUAACCAAAUGGUAGGACCGGGACCGAACAGUGGACCCGCCGUUGGCGGAGCUGGCGGA ...((((((........((((((((........))))))))(((....)))....))))))(((..((((....(((((...))))).)))).))). ( -41.60) >DroPse_CAF1 21826 85 + 1 CAAUGCUGGCCAGCAGAUGGG---------UGGCAUGCCUAAUCAAAUGGUGGGCCCUGGGCCGAACAGUGGUCCCGCAG---GUGGGACCGGUGGA ..((((((.(((.....))).---------))))))(((.........))).((((...))))...((.((((((((...---.)))))))).)).. ( -36.10) >DroSec_CAF1 19634 97 + 1 AAAUCCCGGCCAGCAGAUGGGCGUGGGCGUUGGCAUGCCCAACCAAAUGGUAGGACCGGGACCGAUCAGCGGAUUCGCCGUCGGCGGAGUUGGCGGA ...(((((((((.((..(((...(((((((....))))))).)))..)).).)).))))))(((.(((((...((((((...)))))))))))))). ( -46.60) >DroEre_CAF1 20118 97 + 1 AAAUCCCGGUCAGCAGAUGGGCGUGGGCGUUGGCAUGCCCAACCAAAUGGUAGGACCGGGACCAAACAGUGGACCCGCUGUCGGCGGAGCCGUCGGA ...((((((((......((((((((........))))))))(((....)))..))))))))((..((((((....)))))).((((....)))))). ( -47.80) >DroYak_CAF1 19794 97 + 1 AAAUCCCGGGCAACAGAUGGGCGUGGGCGUUGGCAUGCCUAACCAAAUGGUAGGACCGGGACCGAACAGUGGACCUGCUGUCGGCGGAGCCGUCGGA ...((((((.(..((..(((...(((((((....))))))).)))..))....).))))))(((((((((......)))))((((...)))))))). ( -39.50) >DroAna_CAF1 24540 88 + 1 CAAUGCUGGCCAACAGAUGGGC---------GGCAUGCCCAACCAGAUGGUGGGCCCGGGUCCGAACAGUGGUCCCGCCGUCGUCGGGGCAGGUGGU ..((((((.(((.....))).)---------)))))((((.....(((((((((.(((.((....))..))).)))))))))....))))....... ( -42.30) >consensus AAAUCCCGGCCAGCAGAUGGGCGUGGGCGUUGGCAUGCCCAACCAAAUGGUAGGACCGGGACCGAACAGUGGACCCGCCGUCGGCGGAGCCGGCGGA ...((((((((......((((((((........))))))))(((....))).)).))))))(((.....(((..((((.....))))..))).))). (-27.55 = -28.50 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:43 2006