Locus 1608

Sequence ID 2L_DroMel_CAF1
Location 4,326,296 – 4,326,401
Length 105
Max. P 0.672108
window2580

overview

Window 0

Location 4,326,296 – 4,326,401
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.24
Mean single sequence MFE -22.49
Consensus MFE -10.01
Energy contribution -10.65
Covariance contribution 0.64
Combinations/Pair 1.13
Mean z-score -2.61
Structure conservation index 0.45
SVM decision value 0.29
SVM RNA-class probability 0.672108
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4326296 105 - 22407834
----GCG---AAUGCGAUGAAUUUGCAAU----UGAAUUAAAUUGCAUUACUCAC----AGUUGUCAACAAAAUGCCAGCCAUUCAAUUCGAUUGAAUCCAAUUGAAAUUGAUUUCAACU
----..(---((((.(.(((...((((((----(......)))))))....))))----.((((.((......)).)))))))))..((((((((....))))))))............. ( -22.00)
>DroVir_CAF1 54847 106 - 1
CGUUGCG-UUCCUGCAAAUAAUUCGCAAU----UGAAUUCAAUUGCAUUACUCAG----AGUUGUCAACA-AAUGCCGAGCAUUCAGUUCGAUUGAAUGCAAUUGAAAUUUAUUUC----
.((((((-(((..(((........(((((----((....))))))).........----..(((....))-).)))(((((.....)))))...))))))))).............---- ( -26.30)
>DroGri_CAF1 77061 106 - 1
--------------AAAAUAACUCGCAAUGAUUUUGAUUUAAUUGCAUUACUCACCACAUGUUGUCAACAAAACGACAAGCAUUCAAUGCGAUUGAAUGCAAUUUAAAUUGAAUUCAACA
--------------..............(((.((..(((((((((((((..((......((((((.......)))))).((((...))))))...))))))).))))))..)).)))... ( -24.20)
>DroEre_CAF1 76790 102 - 1
----------AAUGCGAUGAAUUUGCAAU----UGAAUUAAAUUGCAUUACUCAC----AGUUGUCAACAAAAUGCCAGCCAUUCAAUUCGAUUGAAUCCAAUUGAAAUUGAUUUCAACU
----------.......((((..((((((----(......)))))))........----.((((.((......)).))))...((((((((((((....)))))).)))))).))))... ( -19.90)
>DroMoj_CAF1 61180 106 - 1
-----CG-UUCCUGCAAAUAAUUCGCAAU----UGAAUUUAAUUGCAUUACUCAC----AGUUGUCAACAAAAUGCCAACCAUUCAAUUCGAUUGAAUGCAAUUGAAAUUUAUUUCAACA
-----..-....((.((((((....((((----((.(((((((((.(((......----.((((.((......)).)))).....))).))))))))).))))))....))))))))... ( -18.30)
>DroPer_CAF1 101532 112 - 1
CCUUGCGUUUGCUGCAAUGAAUUUGCAAU----UGAAUUAAAUUGCAUUACUCAC----AGUUGUCAACAAAAUGCCAGCCAUUCAAUUCGAUUGAAUCCAAUUGAAAUUGAUUUCAACU
.((.((((((..((((((.....((((((----(......)))))))........----.)))).))...)))))).))....((((((((((((....)))))).))))))........ ( -24.24)
>consensus
_____CG___ACUGCAAAGAAUUCGCAAU____UGAAUUAAAUUGCAUUACUCAC____AGUUGUCAACAAAAUGCCAACCAUUCAAUUCGAUUGAAUCCAAUUGAAAUUGAUUUCAACU
........................(((((............)))))..............((((.((......)).))))...((((((((((((....)))))).))))))........ (-10.01 = -10.65 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:32 2006