Locus 1607

Sequence ID 2L_DroMel_CAF1
Location 4,325,860 – 4,325,975
Length 115
Max. P 0.976296
window2579

overview

Window 9

Location 4,325,860 – 4,325,975
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.10
Mean single sequence MFE -32.16
Consensus MFE -15.41
Energy contribution -17.05
Covariance contribution 1.64
Combinations/Pair 1.12
Mean z-score -2.34
Structure conservation index 0.48
SVM decision value 1.77
SVM RNA-class probability 0.976296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4325860 115 - 22407834
CCCCACUGGCACGACGAUUGCAUUUUCUGCGCUGCAAUGCACUUGUCAAAAAUUGCAUUGCAUUGC-----AGUGCACAAAACAGCAGCGAUGGGAAAACAUGUAAAGUGUGGCGGCAGC
.....(((.((((.((.((((.((((.((((((((((((((..(((........))).))))))))-----)))))).))))..))))))(((......)))......)))).))).... ( -40.70)
>DroSec_CAF1 79975 97 - 1
CCCCACUGGCACGACGAUUGCAUUUUCUGCGCUGCGAUGCACUUGUCAAAAA---CAUUGCAUUGC--------------------AGCGAUGGAAAACCAUGUAAAGUGUGGCGGCAGC
.....(((.(((.((..((((((((((((((((((((((((..(((.....)---)).))))))))--------------------)))).))))))...)))))).))))).))).... ( -38.50)
>DroSim_CAF1 83419 97 - 1
CCCCACUGGCACGACGAUUGCAUUUUCUGCGCUGCGAUGCACUUGUCAAAAA---CAUUGCAUUGC--------------------AGCGAUGGAAAACCAUGUAAUGUGUGGCGGCAGC
.....(((.(.(.((((((((((((((((((((((((((((..(((.....)---)).))))))))--------------------)))).))))))...))))))).))).).).))). ( -39.80)
>DroEre_CAF1 76362 98 - 1
CCCCACUGGCACGACGAUUGCAUUUUCAGCGAUGCGAUGCACUUGUCAAAAA---CAAUGCACUGC----------------CUGCACCAAUGAAACACCAAGUAAAAUUUGGCGGC---
...((.(((...(((((.((((((..((....)).)))))).))))).....---...((((....----------------.))))))).))...(.((((((...)))))).)..--- ( -22.50)
>DroYak_CAF1 82184 105 - 1
CCCCACUGGCACGACGAUUGCAUUUUCUGCGAUGCGAUGCACUGGUCAAAAA---UAAUGCACUAUAGUACAUUGCA-ACAACAGCAGCAAUGAAAAACCAUGUUAAAU-----------
........(((((.(.((((((.....))))))))).)))((((((......---...(((......)))((((((.-.........))))))....)))).)).....----------- ( -19.30)
>consensus
CCCCACUGGCACGACGAUUGCAUUUUCUGCGCUGCGAUGCACUUGUCAAAAA___CAUUGCAUUGC________________C_GCAGCGAUGGAAAACCAUGUAAAGUGUGGCGGCAGC
.....(((.((((((((.((((((....((...)))))))).)))))........((((((..........................))))))................))).))).... (-15.41 = -17.05 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:31 2006