Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,322,637 – 4,322,736 |
Length | 99 |
Max. P | 0.843468 |
Location | 4,322,637 – 4,322,736 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -27.54 |
Consensus MFE | -22.54 |
Energy contribution | -23.34 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.82 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4322637 99 + 22407834 UCAAACGUCUGU-CAAUCCUUCAAGCGCCACCCUUAAGUCCUAACCAG-------AUCAUAUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUGUUGCA ............-........((((((((..(.(((((.((((.....-------.((...((((.....))))..)).)))).))))).)...))))))))..... ( -28.50) >DroSec_CAF1 76733 96 + 1 UC---CGUCUGU-CAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAA-------AUCAUAUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUAUUGCA ..---.......-.........(((((((..(.(((((.((((.....-------.((...((((.....))))..)).)))).))))).)...)))))))...... ( -26.20) >DroSim_CAF1 80134 96 + 1 UC---CGUCUGU-CAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAG-------AUCAUGUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUGUUGCA ..---.......-........((((((((..(.(((((.((((.....-------.((.(.((((.....)))).))).)))).))))).)...))))))))..... ( -28.00) >DroEre_CAF1 73068 95 + 1 UC---CGUCUGU-CAUUCCUUCAAGCGCCACCAUUAAGUCCUAACCAG-------AUCAGAUG-GAUUAUCCCAAGGAGUAGGUCUUAAAGUUCGGUGCUUGUUGCG ..---.......-........((((((((..(.(((((.((((.(((.-------......))-)....(((...))).)))).))))).)...))))))))..... ( -24.30) >DroYak_CAF1 78785 104 + 1 UC---CGUCUGUCCAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAAAGUCCUAAUCAGAUGGGAUUAUCCCCAGGAGUUGGACUUAAAGUUCGGUGCUUGUUGUG ..---................((((((((..(.((((((((.(((...(((((((......))))))).(((...)))))))))))))).)...))))))))..... ( -30.70) >consensus UC___CGUCUGU_CAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAG_______AUCAUAUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUGUUGCA .....................((((((((..(.(((((.((((.............((...((((.....))))..)).)))).))))).)...))))))))..... (-22.54 = -23.34 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:30 2006