Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,302,526 – 4,302,616 |
Length | 90 |
Max. P | 0.526385 |
Location | 4,302,526 – 4,302,616 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -40.52 |
Consensus MFE | -28.21 |
Energy contribution | -30.77 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.05 |
Structure conservation index | 0.70 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4302526 90 + 22407834 CCCUGGCACACUACGAAAAUCCUAUGUAUGAGUGU--------GUGAGGG--GGGGGGGGGGGCAGAGAUGCCACCCACUUUCCACCGCCCCAGCACUUU ((((.(((((((..................)))))--------)).))))--((..(((((((((....)))).))).))..))...((....))..... ( -38.37) >DroSec_CAF1 56655 100 + 1 CCCUGGCACACUACAAAAAUCCUCUGUAUGUGUGUGGGCGCGUGUGAGUGUGUGUGGGGCGGGCGGUGAUGCCACCCACUUUCCACCGCCCCAGCACUUU ..(((((((((((((.........)))).))))))(((((.(((.(((.....(((((...((((....)))).))))).))))))))))))))...... ( -41.60) >DroSim_CAF1 58148 100 + 1 CCCUGGCACACUACAAAAAUCCCCUGUAUGUGUGUGGGCGCGUGUGAGUGUGUGUGGGGCGGGCGGUGAUGCCACCCACUUUCCACCGCCCCAGCACUUU ..(((((((((((((.........)))).))))))(((((.(((.(((.....(((((...((((....)))).))))).))))))))))))))...... ( -41.60) >consensus CCCUGGCACACUACAAAAAUCCUCUGUAUGUGUGUGGGCGCGUGUGAGUGUGUGUGGGGCGGGCGGUGAUGCCACCCACUUUCCACCGCCCCAGCACUUU ..(((((((((((((.........)))).))))))(((((.(((.(((.....(((((...((((....)))).))))).))))))))))))))...... (-28.21 = -30.77 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:22 2006