Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,299,664 – 4,299,770 |
Length | 106 |
Max. P | 0.533963 |
Location | 4,299,664 – 4,299,770 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.99 |
Mean single sequence MFE | -21.66 |
Consensus MFE | -17.74 |
Energy contribution | -17.62 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.32 |
Structure conservation index | 0.82 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4299664 106 + 22407834 UGCCUUGGUUCUCAUUCAACCAUCAGCCCCAAUAUCCUCCGGCCUGAAAUCGGGGGACUAUCCUGAUCCUGAACCAC--GACACGAACCCAAAAUCACCAGCCAACCA ((.(.((((((...........((((.((...........)).)))).(((((((.....)))))))...)))))).--).))......................... ( -19.50) >DroSec_CAF1 53812 106 + 1 CGCCUUGGUUCUCAUUCAACCAUCAGCCCCUAUAUCCUCCGGCCUGAAAUCUGGGGACCAUCCCGAUCCUGAACCCC--GACCCGGACCCAAAAUCACCAGCCAACCA .((...(((((....((.....((((.((...........)).))))......(((.....)))))....)))))((--(...)))..............))...... ( -19.30) >DroSim_CAF1 55270 106 + 1 CGCCUUGGUUCUCAUUCAACCAUCAGCCCCUAUAUCCUCCGGCCUGAAAUCGGGGGACCAUCCUGAUCCUGAACCCC--GACCCGGACCCAAAAUCACCAGCCAACCA ....((((((....((((...(((((........((((((((.......)))))))).....)))))..))))..((--(...))).............))))))... ( -21.62) >DroEre_CAF1 50002 99 + 1 UGCCUUGGUUCUCAUUCAACCAUCAGCCCCU--AUCCUCCGGCCUGAAAUCGGGGGACCAUCCCGAUCCUGAACCCC--GACCUGGACCCAAAAUCAC----CAA-AA ..((..((((....((((....((((.((..--.......)).)))).(((((((.....)))))))..))))....--)))).))............----...-.. ( -21.50) >DroYak_CAF1 55305 105 + 1 CGCCUUGGUUCUCAUUCAACCAUCAGCCCCU--AUCCUCCGGCCUGAAAUCGGGGGACCAUCCCGAUCCUGAAUCCCGCGACCCGGACCCAAAAUCACAAGCCAA-GA ...(((((((...(((((....((((.((..--.......)).)))).(((((((.....)))))))..))))).(((.....))).............))))))-). ( -26.40) >consensus CGCCUUGGUUCUCAUUCAACCAUCAGCCCCUAUAUCCUCCGGCCUGAAAUCGGGGGACCAUCCCGAUCCUGAACCCC__GACCCGGACCCAAAAUCACCAGCCAACCA ......(((((...........((((.((...........)).)))).(((((((.....))))))).................)))))................... (-17.74 = -17.62 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:21 2006