Locus 1600

Sequence ID 2L_DroMel_CAF1
Location 4,299,022 – 4,299,113
Length 91
Max. P 0.970737
window2568

overview

Window 8

Location 4,299,022 – 4,299,113
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 74.94
Mean single sequence MFE -20.92
Consensus MFE -16.91
Energy contribution -16.43
Covariance contribution -0.47
Combinations/Pair 1.20
Mean z-score -1.62
Structure conservation index 0.81
SVM decision value 1.66
SVM RNA-class probability 0.970737
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4299022 91 + 22407834
UAUCGUGUAUCUG---AAUGCCGUAUCCCUUU----UCUUUGUCCA-UUUCAGAAGACGCCGUGCACAUCACAGCCAUCCUCGGCGAGGGCGUCAUCUU
.........((((---((..............----..........-.)))))).(((((((((.....))).(((......)))...))))))..... ( -22.71)
>DroPse_CAF1 72616 80 + 1
-----------CA---AUAUCCGUAUCUAUUU----UUUUGUCCAA-UUGCAGAAGAUGCUGUGCACAUCACGGCCAUACUCGGCGAAGGCGUCAUCUU
-----------..---......((((....((----((((((....-..)))))))).((((((.....)))))).))))..((((....))))..... ( -16.60)
>DroGri_CAF1 43292 86 + 1
-------UUACUA---AA---CAUAUGACUUUUUUGUUUUGGUAUAUUUGCAGAAGAUGCUGUGCACAUCACGGCCAUAUUGGGCGAAGGUGUCGUGUU
-------......---..---.(((((((.(((((((.(..((((((((.....))))((((((.....)))))).))))..)))))))).))))))). ( -21.20)
>DroEre_CAF1 49355 82 + 1
---------UCUG---AAAUCCGUAUCCCUUU----UCUUUAUCCA-UUUCAGAAGACGCCGUGCACAUCACGGCCAUCCUCGGCGAGGGCGUCAUCUU
---------((((---((((..(((.......----....)))..)-))))))).(((((((((.....))).(((......)))...))))))..... ( -25.00)
>DroYak_CAF1 54625 85 + 1
---------UCUAAAGAACCCCAUAUCCCUUU----UCUUUAUCCA-UUACAGAAGACGCCGUGCACAUCACGGCCAUCCUUGGCGAGGGCGUCAUCUU
---------..(((((((.............)----))))))....-....(((.(((((((((.....))).((((....))))...)))))).))). ( -23.42)
>DroPer_CAF1 72119 80 + 1
-----------CA---AUAUCCGUAUCUAUUU----UUUUGUCCAA-UUGCAGAAGAUGCUGUGCACAUCACGGCCAUACUCGGCGAAGGCGUCAUCUU
-----------..---......((((....((----((((((....-..)))))))).((((((.....)))))).))))..((((....))))..... ( -16.60)
>consensus
_________UCUA___AAAUCCGUAUCCCUUU____UCUUGAUCCA_UUGCAGAAGACGCCGUGCACAUCACGGCCAUACUCGGCGAAGGCGUCAUCUU
...................................................(((.(((((((((.....))).(((......)))...)))))).))). (-16.91 = -16.43 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:20 2006